Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O20
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 506 PFSXXPXXNPPPXXAXXTGPPPPPXXP 586
           P    P   PPP      GPPPPP  P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 536 PPXXAXXTGPPPPPXXPGXPG-GPRGXP 616
           PP      GPPPPP  PG  G GP   P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 521 PXXNPPPXXAXXTGPPPPPXXPGXPGG 601
           P   PPP  A    PPPPP  P    G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -1

Query: 615 GXPLGPPGXPGXXGGGGGPVXXAXWGGGXXXGXXEXGP 502
           G P G  G PG  GGG G       G G   G    GP
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 521  PXXNPPPXXAXXTGPPPPPXXPGXPGGP 604
            P    PP  +  T PPPP   P  P  P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 506  PFSXXPXXNPPPXXAXXTGPPPPPXXPGXPGGPRGXP 616
            P    P   PPP        PPPP  P  P GP   P
Sbjct: 1700 PQMSAPTPPPPPMSV-----PPPPSAPPMPAGPPSAP 1731



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 506  PFSXXPXXNPPPXXAXXTGPPPPP 577
            P S  P  + PP  A     PPPP
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 521 PXXNPPPXXAXXTGPPPPPXXPG 589
           P   PPP        PPPP  PG
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +2

Query: 506 PFSXXPXXNPPPXXAXXTGPPPPPXXPGXPGGPRGXPXXXGVP 634
           P S  P   P         PP PP  P  P  P G P    +P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,601
Number of Sequences: 5004
Number of extensions: 18050
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)