Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_O17
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 92 1e-19
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 62 1e-10
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 61 2e-10
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 58 2e-09
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 53 5e-08
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 52 8e-08
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 50 3e-07
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 50 6e-07
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 48 2e-06
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 46 7e-06
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 44 3e-05
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 36 0.008
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 35 0.018
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 33 0.055
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 27 3.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 6.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 8.4
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 26 8.4
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 8.4
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 91.9 bits (218), Expect = 1e-19
Identities = 51/126 (40%), Positives = 72/126 (57%)
Frame = +2
Query: 443 KETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI 622
KE + TCL DL+ S++ + G +P++FI LR++ E F + QQDAHEF NFL+N +
Sbjct: 151 KENIYTCLKDLYCSVSCCDCRYGICSPERFIQVLRRDNEAFRSTQQQDAHEFFNFLLNSV 210
Query: 623 NEIILAERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVS 802
E TL N + V H P WVH +F+GTLTSET+CL CE ++
Sbjct: 211 TE---------TLDEYYGN-------HSDVMH---PKWVHSLFEGTLTSETKCLTCENIT 251
Query: 803 SKR*AF 820
S+ +F
Sbjct: 252 SRDESF 257
Score = 48.8 bits (111), Expect = 1e-06
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +2
Query: 215 MSICQDFGLNFQHRMGANISQLERDIGSEQFPPN---EHYFGLVNFGNTCYSNSVLQALY 385
MS+ + G+N S E ++ P + ++GL N+GNTCY +SVL +LY
Sbjct: 1 MSLLRWMGMNSPGSTDRRKSTWEAELPKPSIRPETLTDRFYGLTNYGNTCYVSSVLVSLY 60
Query: 386 FCRPFREKVLEY 421
+PFR+ + Y
Sbjct: 61 HLKPFRDSLNSY 72
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 835 VDVGQNTSITHCLKCFSDTE 894
+D+ +TS+T CL+ FS +E
Sbjct: 262 IDIENHTSVTSCLRSFSASE 281
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 62.1 bits (144), Expect = 1e-10
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 16/197 (8%)
Frame = +2
Query: 263 ANISQLERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA--KNK 436
AN +++ + E + P GL N GNTCY N VLQ L+ C+ +L+ + +N
Sbjct: 55 ANPKKVDSSLSYENYQP----IGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNI 110
Query: 437 RTKETLLT--CLADLFYSIATQ---KKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFL 601
TK L T + F+S+ SI+P+ F+ ++ +F Q DA EFL
Sbjct: 111 NTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSIDGQCDAQEFL 170
Query: 602 NFLINHINEIILAERNQS---TLKVQKNNSGENVTCN--GSVPHN----TEPTWVHEIFQ 754
NF ++ ++E + + ++S L + ++ E + + + N + + V F
Sbjct: 171 NFFLDKLHEDLNSNASRSPIAPLTEDQLSAREELPLSHFSHIEWNLHLRSNKSIVVNNFV 230
Query: 755 GTLTSETRCLNCETVSS 805
G L S T+C+ C S+
Sbjct: 231 GQLCSRTQCMTCGRTST 247
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 61.3 bits (142), Expect = 2e-10
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 15/173 (8%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC---LADLFYSI--AT 493
GL N GNTCY NS LQ L R R+ + KN+ + L +A +F S+ +
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSL 371
Query: 494 QKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQK 673
+ S AP++F A + K F Y QQD+ EFL FL++ ++E + N+ K
Sbjct: 372 YSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHE----DLNRIYQKPYT 427
Query: 674 NNSGENVTCNGSVPHNTEPTW----------VHEIFQGTLTSETRCLNCETVS 802
+ + + E W + ++FQG S C C TVS
Sbjct: 428 SKPDLYEVDEEKIKNTAEECWRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVS 480
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 58.0 bits (134), Expect = 2e-09
Identities = 31/102 (30%), Positives = 54/102 (52%)
Frame = +2
Query: 323 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 502
Y GL N G TCY NS+LQ+L+F FR+ V + N +++++ L +FY++ Q++
Sbjct: 229 YVGLKNQGATCYMNSLLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQRE 288
Query: 503 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 628
V + + FD++MQ D EF L +++ +
Sbjct: 289 PVSTTELTRSFG-----WNSFDSFMQHDIQEFNRVLQDNLEK 325
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 53.2 bits (122), Expect = 5e-08
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFR------EKVLEYKAKNKRTKETLLTCLADLFYSIA 490
G +N GN C+ NS+LQAL +C PF +++ Y + LT L+ F +
Sbjct: 134 GFINTGNICFMNSILQALMYCVPFYNLLKQINRMVPYNFERTTPLIESLTMLSRDFREYS 193
Query: 491 TQKKKVG-SIAPKKFIARLRKEK--EEFDNYMQQDAHEFLNFLINHINEIILAERNQSTL 661
+ G SI P+ + + E Q+DA EFLN ++ ++E + ER L
Sbjct: 194 EKFDLQGDSILPEVVYSATKGNPRFEMLQTGEQEDAEEFLNLFLDELHEEFVRERRHYLL 253
Query: 662 KVQKNNSGENVTCNGSV 712
K + N ++ + +
Sbjct: 254 KNDERNPKSDIKISNGI 270
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 52.4 bits (120), Expect = 8e-08
Identities = 30/100 (30%), Positives = 48/100 (48%)
Frame = +2
Query: 323 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 502
Y GL N G TCY NS+LQ+LY FR V + + + K+++ L FY++ +
Sbjct: 212 YVGLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNE 271
Query: 503 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI 622
V + K + D++MQ D EF L +++
Sbjct: 272 PVSTTELTKSFG-----WDSLDSFMQHDVQEFNRVLQDNL 306
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQK--- 499
GLVN GNTC+ NSVLQ + P + +L + + C + + A
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLLSGQHSLSCRMNACVLCRMEQHVARAYPNKGT 185
Query: 500 KKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLIN 616
K+ + P + L+ F Y Q+DAHEF+ +L++
Sbjct: 186 KRASAFKPSGIQSMLKVISSHFRPYRQEDAHEFMRYLVD 224
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 49.6 bits (113), Expect = 6e-07
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN------KRTKETLLTCLADLFYSIA 490
GL N G TC+ NS LQ L C + + ++ + K TK + L+ +
Sbjct: 209 GLKNLGATCFFNSTLQVLCACEALHDVISPFQYSHSSVIVRKLTKSPESSLLSAFIKFLE 268
Query: 491 TQKKKVGSIA---PKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHI 622
T K G+I+ P F R+ +F +QQDAHE L L++ +
Sbjct: 269 TFYKSDGTISVYRPTTFFGEFRRLHPQFSESVQQDAHELLRLLLDDL 315
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 48.0 bits (109), Expect = 2e-06
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTC-LADLFYSIATQKK 502
G+ N G TC+ + +LQ++ R + + T +TC + D+F SI K
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKN 205
Query: 503 KVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNS 682
K P + + K + Y QQD HEF +L++ ++ ++
Sbjct: 206 KSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLLDQMH--------------TESGG 251
Query: 683 GENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCE 793
G ++ C T P +H IF G+L + CL+C+
Sbjct: 252 GTSMPC-------TCP--IHRIFSGSLKNVVTCLDCK 279
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 46.0 bits (104), Expect = 7e-06
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 508
GL+N GNTCY NS +Q L + V ++ + E + ++ +
Sbjct: 101 GLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGGLVAE---------YRTLLNSMQSN 151
Query: 509 GSIAPKKFIARLRKEKEEF-------DNYMQQDAHEFLNFLINHINEIILAERNQSTLKV 667
+ P +F+ LR E +F Y QQDA E +FL++ + +R+ S+ V
Sbjct: 152 APVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLS------VLQRSLSSEWV 205
Query: 668 QKNNSGE 688
QKN +G+
Sbjct: 206 QKNMAGK 212
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 44.0 bits (99), Expect = 3e-05
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 508
GL N GN+CY NS LQ + + L + L + + S A+ K +
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYNNPLGMMGKVALSYASLLKMI 339
Query: 509 ------GSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINE 628
S++P F + + F Y QQD+ EF+ F ++ ++E
Sbjct: 340 HHTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFFLDGLHE 385
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 35.9 bits (79), Expect = 0.008
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Frame = +2
Query: 281 ERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNK--RTKET 451
E D F P GL N GN+CY S +Q+L+ + F L + N +T T
Sbjct: 287 EDDASKRLFGPG--LTGLKNLGNSCYLASTMQSLFSIKEFAIHELNLFNTYNSVCQTPTT 344
Query: 452 LLTC----LAD-LFYSIATQKKKVG-------SIAP-----KKFIAR--LRKEKEEFDNY 574
L C LAD L ++ K+G SI P + F+ + + + EF
Sbjct: 345 DLQCQLGKLADGLVSGKFSKPSKIGLLNNPSSSILPYQDGLRPFMFKDVVGQGHSEFGTS 404
Query: 575 MQQDAHEFLNFLINHINEIILAE 643
QQDA+EFL +L+ I + +A+
Sbjct: 405 QQQDAYEFLLYLLGKIRKSSIAK 427
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 34.7 bits (76), Expect = 0.018
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 329 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 418
GL N GN CY NS++Q + +P R +L+
Sbjct: 615 GLENTGNLCYLNSLIQYYFIIKPLRNAILD 644
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 33.1 bits (72), Expect = 0.055
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +2
Query: 329 GLVNF-GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKK 505
GL N GN C+ N VLQ+L +E +LE K + + TL L +L +
Sbjct: 50 GLYNVSGNDCFLNCVLQSL----ASQESLLEI-LKLRCSSSTLYATLYELLQKL--NSGP 102
Query: 506 VGSIAPKKFIARLR-KEKEEFDNYMQQDAHEFLNFLI 613
I P F+ L ++ +QQDA EFL L+
Sbjct: 103 GNPITPGSFLNSLEIATNKKLVRSIQQDAQEFLQHLV 139
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 891 RVAEALEAVRDARVLTHVHPVNQXNAHLLLLTVSQLRHLVSLVNVP 754
++ +E V D VLT HP N+H L+ + L L+ V++P
Sbjct: 334 KLTSPIELVVD--VLTGFHPSIDKNSHALIQWANDLNVLILSVDIP 377
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 343 WQHLLQQLSVASFIFLSPIQRESIRVQS*E*KDQGNSINMPGRFIL*HSYSKEKSWINC 519
W++ L QLS+ S I LSP IR + +S+ ++ ++ EKS +NC
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNC 416
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 8.4
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 263 ANISQLERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRT 442
+ +SQL ++Q PP+EH GL + S+S +F E N
Sbjct: 2 SRLSQLLNSKKAKQKPPSEHPIGLSSILKQDSSSSSDSPNFFPSSSTNDHQERDTINDTN 61
Query: 443 KETLLTCLADLFYSIATQKKKVGSIAP--KKFIARLRKEKEEFDNYMQQDAHEFLNFLIN 616
+A ++KK+ S P ++ + KEKE+ + + +FL+
Sbjct: 62 FVVPEKQKTSKLALLAAERKKLHSSFPSTQQQPPKTEKEKEKEPIQAKHKKNVENDFLLQ 121
Query: 617 HINEIILAERNQS 655
++ +AE+ S
Sbjct: 122 RFRKVRIAEKKDS 134
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 419 YKAKNKRTKETLLTCLADLFYSI--ATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQ 583
Y K+ +K TL+ + +I +Q KK+G P ++ K EFD+ + Q
Sbjct: 299 YGFKSSDSKATLIKIVESCLDAIDSRSQSKKLGKETPHDYLITSTKTVLEFDDIVTQ 355
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 268 YITVGKRYRVRAVPT*RTLFRISQFWQH 351
+ GKR+ V +PT R +F +S+ H
Sbjct: 232 FAATGKRFTVFLIPTVRQIFPVSKLLPH 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,728
Number of Sequences: 5004
Number of extensions: 77754
Number of successful extensions: 243
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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