Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O16
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    29   4.5  
Z95559-4|CAB09004.1|  110|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 827 YICIHILFSELFSKIIIRCLSIFGNLYIMFLY 732
           + C H L  +L + +  RC S FG+ ++ F Y
Sbjct: 467 FYCAHKLGKDLHNMMRSRCCSCFGHFFLYFTY 498


>Z95559-4|CAB09004.1|  110|Caenorhabditis elegans Hypothetical
           protein Y41E3.8 protein.
          Length = 110

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 188 MVYVTGDGTIVEKSPFSFMGWFWALLNFFSLLFHTLIDSNYNKHGKKYTRDFR 346
           MVY+  DG ++EK     +        F  L F +L+      +    ++D+R
Sbjct: 1   MVYIDKDGNVLEKKQKGIVEMIVGFFTFIMLFFRSLLGFTSPTNRNSNSQDYR 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,696
Number of Sequences: 27780
Number of extensions: 319513
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)