Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_O12
(1001 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 35 0.12
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 35 0.12
06_03_0905 + 25843547-25844314 32 0.83
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 31 1.1
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 31 1.1
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 1.9
12_02_1174 - 26696869-26698191 29 4.4
10_03_0023 - 7151465-7152111,7152222-7152405 29 4.4
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 7.7
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 7.7
02_02_0240 + 8196140-8198248,8198381-8198650 29 7.7
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +3
Query: 666 GXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXX---RXPXXGPXPLTGXPVPHSX 836
G PRP PP++ + P G+ P PP P P PL P P S
Sbjct: 262 GGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGP-PRSI 320
Query: 837 PPGXRGGXXM 866
PP G M
Sbjct: 321 PPPPMTGGAM 330
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 34.7 bits (76), Expect = 0.12
Identities = 21/69 (30%), Positives = 25/69 (36%)
Frame = +3
Query: 621 RPGTGXXPRCWXFPXGXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGP 800
+PG P+ P+P PPK K KP K P P + P GP
Sbjct: 158 KPGPKPKPKPSPPKPKPGPKPKPPK-PGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP 216
Query: 801 XPLTGXPVP 827
P G P P
Sbjct: 217 KPKPGPPQP 225
Score = 29.9 bits (64), Expect = 3.3
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = +3
Query: 675 PRPXPPKIXXX-NSKVXKPXGTXK--MPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPP 842
P+P PPK K KP K PG P P P P P P P PP
Sbjct: 165 PKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPP 223
>06_03_0905 + 25843547-25844314
Length = 255
Score = 31.9 bits (69), Expect = 0.83
Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Frame = +3
Query: 600 CDQXASQRPGTGXXPRCWXFPXGXA-PRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPX 776
CD + P P G P P PPK S V +P P V PP
Sbjct: 33 CDCDKPKHPKPSHPSPSPGHPKGPKNPTPRPPKGPTYPSPVTRPPPLVAPPKVPVTHPP- 91
Query: 777 XRXPXXGPXPLTGXPVPHSXPP 842
+ P P P+T P + PP
Sbjct: 92 -KGPVTRPPPVTYPTPPVTTPP 112
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 31.5 bits (68), Expect = 1.1
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = +3
Query: 675 PRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPGXRG 854
PRP P N+ P + PG P PP + P P P P P S P G
Sbjct: 597 PRPPPAPSATANTASALPPPPPRPPGAPPPPPPPGK-PGGPPPP---PPRPGSLPRNLAG 652
Query: 855 G 857
G
Sbjct: 653 G 653
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 856 PPRXPGGXECGTGIPVSGXGPXXGXRXKGGSXGXT 752
PPR PG CG+G + G G GG G T
Sbjct: 91 PPRLPGHRRCGSGPLIFSGGSSGGSGGGGGDRGST 125
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +3
Query: 675 PRPXPPKIXXXNSKVXKPX--GTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPGX 848
P P PPK P P P PP + P P P P P P G
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 849 RGGXXMXP 872
+GG P
Sbjct: 374 KGGPPPPP 381
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = +3
Query: 675 PRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPGXRG 854
P P PPK P P P PP + P P P G PP +G
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPP--PAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
Query: 855 GXXMXP 872
G P
Sbjct: 385 GASRPP 390
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 30.7 bits (66), Expect = 1.9
Identities = 32/126 (25%), Positives = 38/126 (30%), Gaps = 2/126 (1%)
Frame = +3
Query: 606 QXASQRPGTGXXPRCWXFPXGXAPRPXPPKIXXXNSKVXKPX--GTXKMPGVXPXDPPXX 779
Q A+ + G FP G PRP P + + P G MPGV P P
Sbjct: 60 QAAAFQVGAPFNQHLLSFPGG-VPRPRLPILPTPGMPLGVPQVPGAPLMPGVRPPILPAP 118
Query: 780 RXPXXGPXPLTGXPVPHSXPPGXRGGXXMXPXX*GFXVSVLXSXGXXPGPRGXGTPXXQT 959
P P PPG M P ++ L P P G P
Sbjct: 119 GIPGYPGAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTS-GAPGAPI 177
Query: 960 PXXXGP 977
P P
Sbjct: 178 PNSGAP 183
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = +3
Query: 660 PXGXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXP 839
P +P P PP ++V P + P V P PP P P P P P
Sbjct: 116 PPALSPVPPPPPPPRTRTRVEPP---HRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKP 172
Query: 840 P 842
P
Sbjct: 173 P 173
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +3
Query: 675 PRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXP--XXGPXPLTGXPVPHSXPP 842
P P PP+ +V +P + P P P P P P P P S PP
Sbjct: 246 PPPPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPP 303
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +3
Query: 681 PXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPP 842
P PP + P +P + P PP P P PL P P PP
Sbjct: 194 PAPPSLVPPVFPTPSPPSI--LPPLTPQPPPSSLIPPVLPLPLLNPPPPPPPPP 245
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +3
Query: 675 PRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPGXRG 854
PRP P N+ + PG P PP + P P P P P S P G
Sbjct: 902 PRPPPAPSATANTASALSPPPPRPPGAPPPPPPPGK-PGGPPPP---PPPPGSLPRNLAG 957
Query: 855 G 857
G
Sbjct: 958 G 958
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 7.7
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +3
Query: 675 PRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPG 845
P P PP +S+ P +P + P PP + P P P PPG
Sbjct: 204 PPPPPPPPLPASSEPVDPSAA-SLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPG 259
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 28.7 bits (61), Expect = 7.7
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 681 PXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXG-PXPLTGXPVPH 830
P PP I + P MP P PP G P P + P PH
Sbjct: 594 PPPPPIPGQPQVIRMPGSMGPMPTNIPPPPPGQNPYMPGPPRPYSMPPPPH 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,012
Number of Sequences: 37544
Number of extensions: 252709
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2940399740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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