Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O12
         (1001 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    32   0.56 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    32   0.56 
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    31   0.98 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   3.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   3.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   3.0  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   5.2  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
 Frame = +3

Query: 666 GXAPRPXPP-KIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPP 842
           G  PRP PP            P G    P   P  PP       GP  + G P P   PP
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP--PPP 339

Query: 843 GXRGGXXMXP 872
           G R    M P
Sbjct: 340 GMRYPGGMPP 349


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
 Frame = +3

Query: 666 GXAPRPXPP-KIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPP 842
           G  PRP PP            P G    P   P  PP       GP  + G P P   PP
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP--PPP 349

Query: 843 GXRGGXXMXP 872
           G R    M P
Sbjct: 350 GMRYPGGMPP 359


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
 Frame = -2

Query: 871 GXMXXPPRXPGGXECGTGIPVSGXGPXXGXRXKGGSXGXTPGIFXVPXGFXTFELXXXIL 692
           G    PP  P G  CG G P +G          GG      G +    GF         +
Sbjct: 27  GCCAPPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGGYAQPGGGYGGAGGFGGAYQAAPAI 86

Query: 691 GGXG--RGAXPXG 659
           GG G   GA P G
Sbjct: 87  GGGGSYAGAGPIG 99


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +3

Query: 666 GXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPG 845
           G  P P  P I         P G   + G  P  PP    P     P++G P P   PPG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-----PISGGPPPPPPPPG 766


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +3

Query: 666 GXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPG 845
           G  P P  P I         P G   + G  P  PP    P     P++G P P   PPG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-----PISGGPPPPPPPPG 766


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +3

Query: 666 GXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPG 845
           G  P P  P I         P G   + G  P  PP    P     P++G P P   PPG
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-----PISGGPPPPPPPPG 349


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 24/79 (30%), Positives = 26/79 (32%)
 Frame = +3

Query: 747  PGVXPXDPPXXRXPXXGPXPLTGXPVPHSXPPGXRGGXXMXPXX*GFXVSVLXSXGXXPG 926
            PG+ P           GP P+ G P PH    G RGG    P   G            P 
Sbjct: 1537 PGMGPSQYYHDSPQNRGP-PMGGLPPPHGGMNGWRGGP--PPPRGGSHCQGPPPLMGGPP 1593

Query: 927  PRGXGTPXXQTPXXXGPXP 983
            PR    P    P   GP P
Sbjct: 1594 PRLGMPPPGPPPPNGGPPP 1612


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = +3

Query: 660 PXGXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXP 839
           P   A  P PP+     S    P G+   P      PP        P P  G P   S P
Sbjct: 257 PPPAAGSPPPPRT---GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 313

Query: 840 PGXRGG 857
           P   GG
Sbjct: 314 PPQAGG 319


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = +3

Query: 660 PXGXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXP 839
           P   A  P PP+     S    P G+   P      PP        P P  G P   S P
Sbjct: 278 PPPAAGSPPPPRT---GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 334

Query: 840 PGXRGG 857
           P   GG
Sbjct: 335 PPQAGG 340


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = +3

Query: 660 PXGXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHSXP 839
           P   A  P PP+     S    P G+   P      PP        P P  G P   S P
Sbjct: 263 PPPAAGSPPPPRT---GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 319

Query: 840 PGXRGG 857
           P   GG
Sbjct: 320 PPQAGG 325


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = +3

Query: 657 FPXGXAPRPXPPKIXXXNSKVXKPXGTXKMPGVXPXDPPXXRXPXXGPXPLTGXPVPHS 833
           +P    P P PP        V  P    + P   P  PP    P   P      P PHS
Sbjct: 102 YPQHAVPAPAPPPAPYPQHAVPAPAPYQQQP---PPPPPPPHYPPPPPHYPPPPPAPHS 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,973
Number of Sequences: 27780
Number of extensions: 192995
Number of successful extensions: 392
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)