Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_O10
(936 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 36 0.042
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 4.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 4.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 4.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 4.8
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 6.3
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 6.3
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 28 8.3
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 28 8.3
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 28 8.3
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 35.9 bits (79), Expect = 0.042
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -1
Query: 738 PPNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGGFLXRXKXXX 559
PP+ G P P PPP PGA G G G GP P P G G
Sbjct: 393 PPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQG-GPGGFGPPPPGGPGAYGPPPTGF 451
Query: 558 PP 553
PP
Sbjct: 452 PP 453
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +2
Query: 536 FFXXSGGGXXXFXRXKKPPXPXGXGVLFLGPFPVSXPXXP--XAPGFWGGGXXFXLPXRG 709
F SGGG PP P G G L P + P P F GGG P G
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGGCGGPAPCGG 76
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = -1
Query: 735 PNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGGFLXRXKXXXP 556
P G P P G PP PGA G G GPK P P G G + P
Sbjct: 214 PLTPGAPGEP--GDSGPPGPPGPPGAPGNDGPPGPPGPKG-APGPDGPPGVDGQSGPPGP 270
Query: 555 P 553
P
Sbjct: 271 P 271
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 681 PPPQXPGAXGLXGXETGXGPKNKTPXPXGXGG 586
PPP P GL G P P P G GG
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 681 PPPQXPGAXGLXGXETGXGPKNKTPXPXGXGG 586
PPP P GL G P P P G GG
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 678 PPQXPGAXGLXGXETGXGPKNKTPXPXGXGGFLXRXKXXXPP 553
PP PGA G G GPK +P P G G + PP
Sbjct: 233 PPGPPGAPGNDGPPGPPGPKG-SPGPDGPAGVDGQAGPPGPP 273
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 678 PPQXPGAXGLXGXETGXGPKNKTPXPXGXGGFLXRXKXXXPP 553
PP PGA G G GPK +P P G G + PP
Sbjct: 233 PPGPPGAPGNDGPPGPPGPKG-SPGPDGPAGVDGQAGPPGPP 273
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = -1
Query: 735 PNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGGFLXRXKXXXP 556
P G P P G PP PGA G G GPK P P G G + P
Sbjct: 209 PLTPGAPGEP--GDSGPPGPPGPPGAPGNDGPPGPPGPKG-APGPDGPPGADGQSGPPGP 265
Query: 555 P 553
P
Sbjct: 266 P 266
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = -1
Query: 735 PNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGGFLXRXKXXXP 556
P G P P G PP PGA G G GPK P P G G + P
Sbjct: 209 PLTPGAPGEP--GDSGPPGPPGPPGAPGNDGPPGPPGPKG-APGPDGPPGADGQSGPPGP 265
Query: 555 P 553
P
Sbjct: 266 P 266
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -1
Query: 738 PPNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGG 586
PP G P P PP PG G+ G + G T P GG
Sbjct: 159 PPGIKGWPGFP-----GDVGPPGPPGLKGIDGEDGAPGETGPTGPPGYRGG 204
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -1
Query: 738 PPNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGG 586
PP G P P PP PG G+ G + G T P GG
Sbjct: 196 PPGIKGWPGFP-----GDVGPPGPPGLKGIDGEDGAPGETGPTGPPGYRGG 241
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -1
Query: 738 PPNFXGXPNXPLXGXXNXFPPPQXPGAXGLXGXETGXGPKNKTPXPXGXGG 586
PP G P P PP PG G+ G + G T P GG
Sbjct: 180 PPGIKGWPGFP-----GDVGPPGPPGLKGIDGEDGAPGETGPTGPPGYRGG 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,140
Number of Sequences: 27780
Number of extensions: 226547
Number of successful extensions: 631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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