Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O09
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   3.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   3.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   4.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   4.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   8.3  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   8.3  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 260 FQCEH*ISLHCNRCHNYKILL*HQLHNLNFYS 165
           F C   +  HC   HN+      Q +NL+FY+
Sbjct: 67  FTCLKDLWSHCKEAHNFDFYQVKQQNNLDFYA 98


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 530 YRSKKTL-GTVVGDEVRQLVPVQSLRLRVIQRP 435
           +  K+TL G VVGD +  +V +  L L   QRP
Sbjct: 123 WNGKQTLFGRVVGDTIYNVVRISELELDANQRP 155


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 660 SHNTASFVDLSFWSIRPFVRRVG 592
           S+N  S  DLSFWS   FVR  G
Sbjct: 379 SNNFVSTSDLSFWSREYFVRSKG 401


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 498  DYSTKGLLTSVMSSYLVNPGCYKVTMLIFQLSQLAVQK--VLSTRMKDRQKKLYYEI 662
            D STKG+L  +MS+  V    +     +F LS L + K  + S    + Q+ LYY +
Sbjct: 1009 DESTKGILYEIMSTLFVFSRAFP---FLFDLSYLHLLKPYLRSASTIEEQRFLYYVV 1062


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 674 VLICNLIIQLLLSIFHSGR*DLLYGELGQLEDQHCDFVTSRV 549
           +L C+ I+  L S+ H G  + L   +  LED     + S+V
Sbjct: 696 ILYCSAIVLFLFSVMHLGAENPLLESIYLLEDMGSRTIDSKV 737


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 464 IVQERAGELHLRLQYQGSSYFCNVL-ILGEPWMLQSHNADLPTVPTR 601
           ++    G +  + ++QG   F  V  +  E W++ S+ +D+P + T+
Sbjct: 645 VMDSVTGSIVYQNKHQGIILFDKVYGVFSENWLVYSYQSDVPNLSTK 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,802
Number of Sequences: 5004
Number of extensions: 74679
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)