Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O09
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-4|ABO16461.1|  254|Caenorhabditis elegans Hypothetical ...    30   2.6  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    29   3.4  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    29   3.4  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    29   3.4  
Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        29   5.9  
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    29   5.9  

>AC006730-4|ABO16461.1|  254|Caenorhabditis elegans Hypothetical
           protein Y27F2A.10 protein.
          Length = 254

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 331 ICFSNSPDIGCSLLNKPILRMVSFFSANTRSLCIAIVVII 212
           ICF     I   LLN+ I+  +S++       C+ I+V+I
Sbjct: 30  ICFVAKHQIFAKLLNRHIVSRISYYFGAAGFTCVPIIVVI 69


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 590 QLEDQHCDFVTSRVHQV*GHYRS 522
           QL  QHC+FVT   H +  HYR+
Sbjct: 544 QLNCQHCNFVTEYKHHLEYHYRN 566


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 590 QLEDQHCDFVTSRVHQV*GHYRS 522
           QL  QHC+FVT   H +  HYR+
Sbjct: 566 QLNCQHCNFVTEYKHHLEYHYRN 588


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 590 QLEDQHCDFVTSRVHQV*GHYRS 522
           QL  QHC+FVT   H +  HYR+
Sbjct: 566 QLNCQHCNFVTEYKHHLEYHYRN 588


>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 288 LSKLHPMSGELLKQIFRDNALEKPTQNVFNHVSHYLVSIIDVQASAALPWPLYDTKTER- 464
           L K  P SG   K         K  +NV    S  LVS++++         +++TK +R 
Sbjct: 45  LVKQFPNSGRYWKAYIEHELRSKNFENVEKLFSRCLVSVLNIDLWKCYIHYVFETKGQRD 104

Query: 465 LYRNELA 485
            YR E+A
Sbjct: 105 QYREEMA 111


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 288 LSKLHPMSGELLKQIFRDNALEKPTQNVFNHVSHYLVSIIDVQASAALPWPLYDTKTER- 464
           L K  P SG   K         K  +NV    S  LVS++++         +++TK +R 
Sbjct: 40  LVKQFPNSGRYWKAYIEHELRSKNFENVEKLFSRCLVSVLNIDLWKCYIHYVFETKGQRD 99

Query: 465 LYRNELA 485
            YR E+A
Sbjct: 100 QYREEMA 106


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 288 LSKLHPMSGELLKQIFRDNALEKPTQNVFNHVSHYLVSIIDVQASAALPWPLYDTKTER- 464
           L K  P SG   K         K  +NV    S  LVS++++         +++TK +R 
Sbjct: 45  LVKQFPNSGRYWKAYIEHELRSKNFENVEKLFSRCLVSVLNIDLWKCYIHYVFETKGQRD 104

Query: 465 LYRNELA 485
            YR E+A
Sbjct: 105 QYREEMA 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,657
Number of Sequences: 27780
Number of extensions: 408897
Number of successful extensions: 1074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)