Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O09
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.93 
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.6  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +2

Query: 152 RSIIKSKNSNYVIGVI-----TKFCNYDNDCNAKRSSVRTEKRNHSQYWFIKQAASDVWR 316
           +SII+S +    +  I       FC +  +    +++VR     H  +  ++     VW 
Sbjct: 515 QSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWT 574

Query: 317 VTEADFSR*R 346
           V E +F + R
Sbjct: 575 VDEVEFYKRR 584


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 127 LTMLRIKNPFNNQE*KFKL 183
           L  L+  +PF N E KFKL
Sbjct: 49  LYTLKTTSPFKNTEIKFKL 67


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 612 VLSTRMKDRQKKLYYEITNKYKLNY 686
           +L   +  + + LYY   + + LNY
Sbjct: 250 ILGMALSHKTQNLYYSAMSSHNLNY 274


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 748 YILKRNTMERIAGLLLNKSKK 810
           Y L R TME +A   LNK  K
Sbjct: 558 YPLMRRTMESVAAERLNKIGK 578


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 564 KVTMLIFQLSQLAVQKVLSTRMKDRQKKLYYEITN 668
           K + +I  LS   +    +   K+  KKLYY I N
Sbjct: 310 KESKIISSLSNKTIHN--NNNYKNYNKKLYYNIIN 342


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 748 YILKRNTMERIAGLLLNKSKK 810
           Y L R TME +A   LNK  K
Sbjct: 526 YPLMRRTMESVAAERLNKIGK 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,145
Number of Sequences: 438
Number of extensions: 5326
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)