Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O08
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    41   0.001
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    33   0.40 
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    31   1.2  
06_03_0592 + 22585546-22588573,22588680-22589032                       29   6.5  
04_03_0495 + 16545795-16546029,16546125-16546360,16546863-16547144     28   8.5  

>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = +3

Query: 483 LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLP---PLSCWTFHNSY--- 644
           + P   F + W + N G+  WP   +LI  GG+   A   Y+P   P+  +         
Sbjct: 518 MAPSTPFTKIWRMHNNGSIMWPLGTQLIWVGGDQF-ALQTYVPLEIPVDGFPVDQEIDVA 576

Query: 645 IKISSPFNFWNHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALGRT 785
           +   +P     + S++ L +  G++ G  +WV + VE    ++  RT
Sbjct: 577 VDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVEDPSFVSNNRT 623


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
 Frame = +3

Query: 471 PTGS-LEPGARFDQNWSIVNTGTEQWP-GCCRLIQAGGEPLGATPVYLPPLSCWTFH--- 635
           P G+ + P   F + W I N G+  WP G C L   GG            +S   F    
Sbjct: 543 PDGTVMAPSTPFTKIWRIHNNGSSMWPYGTC-LTWVGGHLFARNSSVKLGISVDGFPIDQ 601

Query: 636 --NSYIKISSPFNFWNHKSFFHLVTDKGEQIGDTLWVEVTVE 755
             +  +   +P     + S++ L +  G+  G  +WV + VE
Sbjct: 602 EIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVE 643


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 330 LLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTSPKLPS 446
           L G  LNY++  F   +S     AA+ C LDYT P  P+
Sbjct: 49  LAGILLNYDSTWFTQFLSRPTAAAAVSCRLDYTVPPPPA 87


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 282 CMNTTDREELIKQMQKLLGPSLNYNT-ASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVK 458
           C  T DR+ L+    +L GPS   ++ ++  L+  NW+    + C    + P++ ++ + 
Sbjct: 28  CNETDDRQALLCFKSQLSGPSRVLSSWSNTSLNFCNWD---GVTC-SSRSPPRVIAIDL- 82

Query: 459 ASEGPTGSLEP 491
           +SEG TG++ P
Sbjct: 83  SSEGITGTISP 93


>04_03_0495 + 16545795-16546029,16546125-16546360,16546863-16547144
          Length = 250

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +3

Query: 294 TDREELIKQMQKLLGPS-LNYNTASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEG 470
           T R +  K + ++  PS +    +++ L+  N +L    C  +        ++ + +S G
Sbjct: 125 TKRPKKSKSIYEIGPPSWIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRG 184

Query: 471 PTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAG 575
            + S        ++W +  +  +   GCC L+ +G
Sbjct: 185 RSSSSS-----SRSWEVACSVNKNGYGCCNLLPSG 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,700,020
Number of Sequences: 37544
Number of extensions: 387053
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)