Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O08
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 51  ISSLCRNSFFRNNKSQLTYIRKQRICHYT*KL*INYYKQLII 176
           ISSL  N  + NN  +  Y    R  +Y     INY +Q+ I
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYRKLYYN----INYIEQIPI 119


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 657  SPFNFWNHKSF 689
            +PFNFWN   F
Sbjct: 1159 TPFNFWNPPPF 1169


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 717  QIGDTLWVEVTVESEMTMALGRTISSTSSXLXVDWKN 827
            Q  D L   +TV+   +  +    SSTSS + + WK+
Sbjct: 1390 QGNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLHWKS 1426


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 717  QIGDTLWVEVTVESEMTMALGRTISSTSSXLXVDWKN 827
            Q  D L   +TV+   +  +    SSTSS + + WK+
Sbjct: 1386 QGNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLHWKS 1422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,055
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)