Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O07
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    28   2.0  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.7  

>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 874 LVLXVTYTCFRYVK--GDVAIHTCLAFVFLCWSYLDSFVITTPIFKWLDILT 725
           +V  + + C +Y+   G +     L  +F  W  LDS +  + +   +DI T
Sbjct: 207 VVFDIAFACHQYLVLGGRITDSMVLVIIFHTWYVLDSLINESAVLTTMDITT 258


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 778 LDSFVITTPIFKWL---DILTTRWQSYNNTTHLIFSRLFNFLDNSESL 644
           L++ +I     +W+   D + TR+++  +T H+IF++  N  DN E++
Sbjct: 3   LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKIN--DNPENM 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,573
Number of Sequences: 5004
Number of extensions: 67110
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)