Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_O06
(914 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 46 5e-07
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.7
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 5.1
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 23 5.1
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 5.1
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 5.1
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 23 5.1
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 5.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 6.8
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 8.9
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 46.0 bits (104), Expect = 5e-07
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Frame = +2
Query: 89 SFTNKVVLVTXXXXXXXXXXXVHFAKEGADVAIVGRNVTKLDNVARECAQVGKKPVIIKA 268
++ ++V LVT +G V + V K+ + E K V ++
Sbjct: 4 NWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQC 63
Query: 269 DISKDEEAKTIVQQTIEAFGKLDVLINNAGMNKSGSLLAGNLLESYDAVTATNLRAVILI 448
D+S + +++ + G +D+LINNA +N +L +L+ + + NL + +
Sbjct: 64 DLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLD-WKKIFDINLLGLTCM 122
Query: 449 TSLAAPHLIE---TKGNIINVSSIGG-TMVPM-PGFLAYCMGKASLNHFTRGIALELA-- 607
+ + G I+N++ G ++PM AY K +L T + ELA
Sbjct: 123 IQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQC 182
Query: 608 PHGVRANIISPGLVLTDI 661
++ ISP LV TD+
Sbjct: 183 ESNIKVISISPDLVETDM 200
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 1.7
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -3
Query: 492 MFPFVSMRCGAARLVIKMTALRLVAVTASYDSRRLPASRDPDLFIPALLMSTS 334
+ P + + C V T L V S P ++P +F+P MST+
Sbjct: 787 ILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPPQQNPYMFLPVSYMSTT 839
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 5.1
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +2
Query: 623 ANIISPGLVLTDIIENSDNQISWDIFRAATALKKLGEPSEIAELMLF 763
+ + PG + + Q+ ++ T +LG+PS I++ LF
Sbjct: 507 SEVRQPGKAPNYSVNWTIGQLEAEVINCTTGKDELGKPSRISKQGLF 553
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 22.6 bits (46), Expect = 5.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 802 VRASYASSFVTCQEQHQLGNF*RFS*FLQRRGSPKNVPANLIIRVLND 659
V +Y + + +++ + F F F + SP ANL R+LND
Sbjct: 440 VNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLND 487
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.6 bits (46), Expect = 5.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +1
Query: 409 RSHSD*SESGHFDNEPRCSAPHRDEGKHHKRIQYRRNHGTNARV 540
R+H S H+ E CS E K R +Y + H ++
Sbjct: 220 RTHGFQHTSSHYSRERSCSRDRNREYKEKDR-RYEKLHNEKEKL 262
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.6 bits (46), Expect = 5.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -1
Query: 545 PETLALVPWFRRYW 504
P+T PWF YW
Sbjct: 272 PDTNRRNPWFSEYW 285
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 22.6 bits (46), Expect = 5.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 802 VRASYASSFVTCQEQHQLGNF*RFS*FLQRRGSPKNVPANLIIRVLND 659
V +Y + + +++ + F F F + SP ANL R+LND
Sbjct: 440 VNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLND 487
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.6 bits (46), Expect = 5.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -1
Query: 545 PETLALVPWFRRYW 504
P+T PWF YW
Sbjct: 362 PDTNRRNPWFSEYW 375
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 6.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 545 PETLALVPWFRRYWIRL 495
P+T + PW RR +I +
Sbjct: 332 PQTHVMAPWVRRVFIHV 348
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.8 bits (44), Expect = 8.9
Identities = 5/11 (45%), Positives = 7/11 (63%)
Frame = +3
Query: 519 PWYQCQGFWHT 551
PW C +W+T
Sbjct: 97 PWGSCNNYWNT 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,964
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -