Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_O03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    87   4e-18
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    29   0.89 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   8.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   8.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 37/55 (67%), Positives = 45/55 (81%)
 Frame = +1

Query: 235 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 399
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQF 78



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 24/62 (38%), Positives = 41/62 (66%)
 Frame = +3

Query: 684 QGQVRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 863
           + + RLG ++H+KT   LA+T V   D+   + +V A+  NF+ +Y+E R+ WGGG++G 
Sbjct: 181 KNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGG 240

Query: 864 KS 869
           K+
Sbjct: 241 KT 242



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +2

Query: 347 RRLYFSVV*KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 526
           RR   ++  K P       +TLDK TA  +FK+L KYRPET                   
Sbjct: 61  RRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGK 120

Query: 527 XXXXXXR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 646
                 + P  ++ G N V  L+E KKA+LV+IA DVDPIE
Sbjct: 121 SAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIE 161



 Score = 33.1 bits (72), Expect = 0.055
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 646 ALCRKMGVPYCIVKGKS 696
           ALC+KMGVPY IVK K+
Sbjct: 168 ALCKKMGVPYAIVKNKA 184


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 557 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 646
           +R G N  TK + +  ++ +V+A D +PIE
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIE 61


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 553 YHPIRHKHSHQAGREEEGAACGHR 624
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 44  LLFCFGHFRRKFGIRFRSRIFSW 112
           L  C+G   R+ G+++ S I SW
Sbjct: 23  LFLCYGKSSRELGVKWNSDIRSW 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,279
Number of Sequences: 5004
Number of extensions: 56955
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)