Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_O03
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 97 1e-20
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 97 1e-20
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 97 1e-20
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 97 1e-20
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 35 0.090
U00025-2|ABA54414.1| 418|Caenorhabditis elegans Amp-activated k... 29 3.4
U00025-1|ABA54413.1| 589|Caenorhabditis elegans Amp-activated k... 29 3.4
AY347272-1|AAR06927.1| 589|Caenorhabditis elegans AMP-activated... 29 3.4
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 28 7.8
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 28 7.8
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +1
Query: 235 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 399
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +1
Query: 235 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 399
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 374 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPET 469
K P LD +A+ FK+L+KYRPE+
Sbjct: 179 KVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +1
Query: 235 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 399
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84
Score = 74.1 bits (174), Expect = 1e-13
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = +3
Query: 684 QGQVRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 863
+G+ LG +V RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+
Sbjct: 186 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSA 245
Query: 864 KSTPASL 884
KS L
Sbjct: 246 KSDAKKL 252
Score = 72.9 bits (171), Expect = 3e-13
Identities = 36/91 (39%), Positives = 49/91 (53%)
Frame = +2
Query: 374 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 553
K P LD +A+ FK+L+KYRPE+ RPN
Sbjct: 76 KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPN 135
Query: 554 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 646
T+R G NT+T+LVE ++AQLV+IAHDV+P+E
Sbjct: 136 TVRHGVNTITRLVETRRAQLVLIAHDVNPLE 166
Score = 31.9 bits (69), Expect = 0.64
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 646 ALCRKMGVPYCIVKGKSA 699
ALCRK VPY I+KGK++
Sbjct: 173 ALCRKYNVPYAIIKGKAS 190
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +1
Query: 235 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 399
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84
Score = 74.1 bits (174), Expect = 1e-13
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = +3
Query: 684 QGQVRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 863
+G+ LG +V RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+
Sbjct: 166 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSA 225
Query: 864 KSTPASL 884
KS L
Sbjct: 226 KSDAKKL 232
Score = 61.3 bits (142), Expect = 9e-10
Identities = 36/91 (39%), Positives = 49/91 (53%)
Frame = +2
Query: 374 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 553
K P LD +A+ FK+L+KYRPE+ RPN
Sbjct: 76 KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------------RPN 115
Query: 554 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 646
T+R G NT+T+LVE ++AQLV+IAHDV+P+E
Sbjct: 116 TVRHGVNTITRLVETRRAQLVLIAHDVNPLE 146
Score = 31.9 bits (69), Expect = 0.64
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 646 ALCRKMGVPYCIVKGKSA 699
ALCRK VPY I+KGK++
Sbjct: 153 ALCRKYNVPYAIIKGKAS 170
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 34.7 bits (76), Expect = 0.090
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = -2
Query: 511 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCSG 401
SF SFP QP+ C +++P F+ N+EKA + C ++Q G
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGG 202
>U00025-2|ABA54414.1| 418|Caenorhabditis elegans Amp-activated
kinase protein 1,isoform b protein.
Length = 418
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 557 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIERYAVK 661
I+SG TV +EK+ A L+ VDP++R VK
Sbjct: 63 IKSGRYTVPYSMEKQAADLISTMLQVDPVKRADVK 97
>U00025-1|ABA54413.1| 589|Caenorhabditis elegans Amp-activated
kinase protein 1,isoform a protein.
Length = 589
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 557 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIERYAVK 661
I+SG TV +EK+ A L+ VDP++R VK
Sbjct: 234 IKSGRYTVPYSMEKQAADLISTMLQVDPVKRADVK 268
>AY347272-1|AAR06927.1| 589|Caenorhabditis elegans AMP-activated
protein kinase alphasubunit 2 protein.
Length = 589
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 557 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIERYAVK 661
I+SG TV +EK+ A L+ VDP++R VK
Sbjct: 234 IKSGRYTVPYSMEKQAADLISTMLQVDPVKRADVK 268
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 673 YCIVKGKSASVHLYTARHAH 732
YC V G+S + YTAR AH
Sbjct: 1572 YCYVTGRSVGIGAYTARLAH 1591
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 34 SLRFAFLFRPFSPKVWYTI*VTYLFVA 114
S+ FLF PFS VW + +T L VA
Sbjct: 49 SVDVVFLFHPFSTTVWLLLSLTVLVVA 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,683,585
Number of Sequences: 27780
Number of extensions: 336319
Number of successful extensions: 1016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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