Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N24
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   3.6  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   4.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   6.3  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   8.3  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   8.3  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -1

Query: 375 LDEFHKQFSFNSRHIQVKRAVSDTVFCSYVSSWFCLVSSS 256
           LD+ H++  FN + + + +A+ D++    +   + ++ +S
Sbjct: 377 LDDIHRRTCFNGKRLYITKAIRDSMVGDSIHGLYSILETS 416


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
 Frame = -2

Query: 305 LFSVLTSPPGFVWFL------QVSAVVFLVLRERWKTTLR------SARQHAFRYEVVNF 162
           L+SV    P F  FL        SAV   VL+ R   TL+       A + A +Y+ +N+
Sbjct: 463 LYSVRNIRPSFHSFLGNYGGMAYSAVEAYVLKGRVPWTLKHKGGDAKATKSASKYKPINY 522

Query: 161 FAPEHVERRDIPT 123
             P++V   DIPT
Sbjct: 523 PKPDNVLSFDIPT 535


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 209 LRSARQHAFRYEVVNFFAPEHVERRDIPTRSKGTI 105
           L+ +   +F++    F  P H+++ +IP R  G I
Sbjct: 578 LKPSTYGSFKHHGKTFVTPPHIKKPEIPLRVSGPI 612


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 809 LTKMIYSKLFKSLKSVITFLNSIKH 735
           LTK +  KL ++L+S I+ L  I+H
Sbjct: 46  LTKKLTKKLLENLESEISILKEIRH 70


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 887 KNVTNXLHLNGEGGAK*IDIKQLFCYLTKMIYSKLFKSLKSVITFLNSIKHN 732
           KN +  L +  E   K    K+ FC+L        F+S  + +  LNSI+ N
Sbjct: 222 KNASRQLQIANEHSRK--ARKRSFCFLKSFAMFSSFRSQNANLYNLNSIRRN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,272
Number of Sequences: 5004
Number of extensions: 63138
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)