Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N21
         (1150 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           32   0.98 
07_03_1136 + 24218601-24218734,24218769-24219906                       30   3.0  
09_02_0543 + 10427321-10428315,10428440-10429154                       29   5.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.2  
01_01_0070 - 542603-542686,542803-543441                               29   6.9  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = +1

Query: 766 AGXAPXPXPXXPXAPXXPLPXPXXXSXXXXXVPPPXGXGRXSTSSXXPPXXGXXSPXXXX 945
           +G  P P P  P AP  P P P          PPP   GR       P   G        
Sbjct: 347 SGPPPPPPPAAPAAPRPPGPGPGPP-------PPPGAAGRGGGGPPPPALPGGPRARGPP 399

Query: 946 PLXXLPG 966
           P    PG
Sbjct: 400 PFKKSPG 406



 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +1

Query: 775 APXPXPXXPXAPXXPLPXPXXXSXXXXXVPPPXGXGRXSTSSXXPPXXGXXSP 933
           AP P P  P AP  P P P   +      PPP      + ++  PP  G   P
Sbjct: 320 APPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPA-APAAPRPPGPGPGPP 371


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 29/111 (26%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
 Frame = -1

Query: 949 GGXPXGAXAXPXXXAXXSWXXRAPXRXEVGXXXXGVXVGGAXAGXXX-VPXGXEGXGXAR 773
           GG   GA A P          R P     G        GG   G     P G  G G   
Sbjct: 150 GGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLG 209

Query: 772 XXXGCXXXQXQXXXGSRXXXGXSSXPXGRXGXAGGAXXXXPGRGGXXXAEE 620
              G      +   G     G      G  G  GGA     G GG   A E
Sbjct: 210 GGGGEGGAPERVIGGGGGGGGALKCVVGGGGGGGGALKRAAGSGGGGGALE 260



 Score = 29.5 bits (63), Expect = 5.2
 Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
 Frame = -1

Query: 835 GGAXAGXXXVPXGXEGXGXAR---XXXGCXXXQXQXXXGSRXXXGXSSXPXGRXGXAGGA 665
           GG   G   +P G  G G AR      G      +   G     G  + P G  G  GGA
Sbjct: 111 GGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPG--GGRGGA 168

Query: 664 XXXXPGRGG 638
               PG GG
Sbjct: 169 LGRPPGGGG 177


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 766 AGXAPXPXPXXPXAPXXPLPXPXXXSXXXXXVPPPXGXGRXSTSSXXPP 912
           +G  P P P  P  P  P P           + PP G G  +  S   P
Sbjct: 33  SGPPPPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPPGPGPAAAPSPHSP 81


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 15/58 (25%), Positives = 17/58 (29%)
 Frame = +1

Query: 775 APXPXPXXPXAPXXPLPXPXXXSXXXXXVPPPXGXGRXSTSSXXPPXXGXXSPXXXXP 948
           +P P P  P  P    P P          PPP G      +   PP      P    P
Sbjct: 310 SPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 34/132 (25%), Positives = 40/132 (30%)
 Frame = +3

Query: 612  SPXSSAXXXPPRPGXXXXAPPAXPXRPLGWEXXPXXLLDPXXX*XXXXXQPXXXRAXPXP 791
            +P  +A    P P     AP A P  P+     P   + P          P   +A P P
Sbjct: 39   TPVPTAPAKSP-PAPATPAPTATPTPPVAPAKAPP--VAPAVA-PVTPPPPTPKKAPPPP 94

Query: 792  SXPXGTXXXPAXAPPTLTPXXKXPTSXRXGARXXQLXXAXXXGXALAPXGXPPXXAPXXX 971
              P      P   PP   P    P +            A     AL P   PP  A    
Sbjct: 95   VTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPA-ALPPATTPPPVAEAPA 153

Query: 972  XLPSPWGAPRXS 1007
             LP P  AP  S
Sbjct: 154  ELP-PAEAPTKS 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,716
Number of Sequences: 37544
Number of extensions: 273126
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3491481604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)