Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N19
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...   141   1e-34
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    29   1.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   8.1  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score =  141 bits (342), Expect = 1e-34
 Identities = 75/124 (60%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = +1

Query: 430 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVEN-EGDKVEYRVWNPFRSK 606
           +VIIEPHRH GVFIARGKED LVT+NLVPG  VY EKRISV++ +G KVEYRVWNPFRSK
Sbjct: 72  KVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSK 131

Query: 607 LAAAIMGWSGCYTHGPWVXSFVSRXLPXXXXXXXXXXXXGPEGLVYAVEFSHRSGRNLIN 786
           LAA I+G        P     +                 GPEGLVYAVEFSHRSGR+L+N
Sbjct: 132 LAAGILGGLDNIYIKPGA-RVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLN 190

Query: 787 VAXK 798
           +A K
Sbjct: 191 MAKK 194



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +2

Query: 629 GVDAIHMAPGSXVLYLGSCQWNNSQSCLXMLWDQKVSFMLSSSLTDPAEI**MLPXKXXF 808
           G+D I++ PG+ VLYLG+    +      ++  + + + +  S     ++  M   +   
Sbjct: 139 GLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLNMAKKRTNV 198

Query: 809 YTYYRXCXTSXKYXMLXXMVD 871
                      KY ML  MVD
Sbjct: 199 IPIVEDARHVQKYRMLVGMVD 219


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 535 EKRISVENEGDKVEYRVWNPFRS 603
           E R+   N+G   +YR WN FRS
Sbjct: 11  ETRLCPSNQGSAKKYRPWNDFRS 33


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -1

Query: 772 CRICERTRQHKRDLLVPQHXET*LTVVPLAAXEI 671
           C++C+R+   + + L  +H  + + V+P  + E+
Sbjct: 674 CQLCQRSLDKEEEKLFVEHCHSMIDVIPSKSAEV 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,002
Number of Sequences: 5004
Number of extensions: 40636
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)