Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N19
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909...   138   4e-33
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...   128   4e-30

>02_05_1258 +
           35290183-35290198,35290292-35290599,35290844-35290939,
           35291067-35291144,35291224-35291400,35292738-35292806,
           35292917-35293093
          Length = 306

 Score =  138 bits (335), Expect = 4e-33
 Identities = 71/124 (57%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
 Frame = +1

Query: 430 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 606
           +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 67  KVVVVPHKHNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 126

Query: 607 LAAAIMGWSGCYTHGPWVXSFVSRXLPXXXXXXXXXXXXGPEGLVYAVEFSHRSGRNLIN 786
           LAAA++G        P     +                 GP GLVYAVEFSHRSGR+L+N
Sbjct: 127 LAAAVLGGVDNIWIAPGT-RVLYLGAASGTTVSHVSDIVGPTGLVYAVEFSHRSGRDLVN 185

Query: 787 VAXK 798
           +A K
Sbjct: 186 MAKK 189



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/81 (24%), Positives = 32/81 (39%)
 Frame = +2

Query: 629 GVDAIHMAPGSXVLYLGSCQWNNSQSCLXMLWDQKVSFMLSSSLTDPAEI**MLPXKXXF 808
           GVD I +APG+ VLYLG+           ++    + + +  S     ++  M   +   
Sbjct: 134 GVDNIWIAPGTRVLYLGAASGTTVSHVSDIVGPTGLVYAVEFSHRSGRDLVNMAKKRTNV 193

Query: 809 YTYYRXCXTSXKYXMLXXMVD 871
                      +Y ML  MVD
Sbjct: 194 IPIIEDARHPARYRMLVGMVD 214


>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score =  128 bits (310), Expect = 4e-30
 Identities = 75/139 (53%), Positives = 88/139 (63%), Gaps = 16/139 (11%)
 Frame = +1

Query: 430 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 606
           +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 70  KVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 129

Query: 607 LAAAIMG-----WSG-----CYTHGP--WVXSFVSRXL---PXXXXXXXXXXXXGPEGLV 741
           LAAA++G     W        Y  G      S VS  +   P               GLV
Sbjct: 130 LAAAVLGGVDNIWIAPGTRVLYLGGASGTTVSHVSDIVGPSPRYAILPFANQVILQTGLV 189

Query: 742 YAVEFSHRSGRNLINVAXK 798
           YAVEFSHRSGR+L+N+A K
Sbjct: 190 YAVEFSHRSGRDLVNMAKK 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,433
Number of Sequences: 37544
Number of extensions: 267330
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)