Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N19
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...   131   5e-31
Z32683-5|CAA83617.1|  191|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   7.6  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score =  131 bits (317), Expect = 5e-31
 Identities = 67/122 (54%), Positives = 80/122 (65%)
 Frame = +1

Query: 433 VIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 612
           V++EPHR  GVFI +GKEDAL TKN+V G  VYGEKR+SV++    +EYRVWNPFRSKLA
Sbjct: 117 VVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDDGAGSIEYRVWNPFRSKLA 176

Query: 613 AAIMGWSGCYTHGPWVXSFVSRXLPXXXXXXXXXXXXGPEGLVYAVEFSHRSGRNLINVA 792
           A+IMG     TH       +                 GPEG+VYAVEFSHRSGR+L+ VA
Sbjct: 177 ASIMGGLE-NTHIKPGTKLLYLGAASGTTVSHCSDVVGPEGIVYAVEFSHRSGRDLLGVA 235

Query: 793 XK 798
            K
Sbjct: 236 KK 237


>Z32683-5|CAA83617.1|  191|Caenorhabditis elegans Hypothetical
           protein R07E5.7 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 614 LQLWVGVDAIHMAPGSXVLYLGSC 685
           L  WV +D  H+ P   +LY G C
Sbjct: 134 LYYWVFIDHFHLPPAEAMLYAGVC 157


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query: 686  GSXRDTKLLTQGPCV*HPLQPIIAAANFDLNGFQTLYSTLSPSFSTDILFSP*TS-DPGT 510
            G+ + + + T  P V   L PI++  +  ++    + STLSP+ ST  L S  TS  P  
Sbjct: 2057 GTTQPSTVSTLSPIV-STLSPIVSTLSPIVSTLSPIVSTLSPTVST--LSSNATSLTPSN 2113

Query: 509  RFLVTNASSLPLAMNTPG 456
              LV+ A++   A  T G
Sbjct: 2114 PVLVSTATTQSPATTTKG 2131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,077
Number of Sequences: 27780
Number of extensions: 228557
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)