Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N18
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.6  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -3

Query: 695 PPXPRPLXGVXXLFXGXXXKXFFLGFXPXFLXXKKTPXGXGKXPXPPPKPRXXGFFXG 522
           PP P P  G+  +  G        G  P        P   G  P PPP P   GF  G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -3

Query: 695 PPXPRPLXGVXXLFXGXXXKXFFLGFXPXFLXXKKTPXGXGKXPXPPPKPRXXGFFXG 522
           PP P P  G+  +  G        G  P        P   G  P PPP P   GF  G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -3

Query: 695 PPXPRPLXGVXXLFXGXXXKXFFLGFXPXFLXXKKTPXGXGKXPXPPPKPRXXGFFXG 522
           PP P P  G+  +  G        G  P        P   G  P PPP P   GF  G
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = -2

Query: 630 FFGXXPXFFGXQKNPXWGXXKXXPPPXTPGXGFFXGGXGXG 508
           F    P F      P +      PPP  P   F  GG G G
Sbjct: 700 FVAPQPQFVAVAPQPQFVAVAPVPPPVAPAVAFAGGGGGGG 740


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,541,500
Number of Sequences: 27780
Number of extensions: 129813
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)