Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N17
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529...    29   6.6  
04_01_0585 - 7608929-7609157,7609559-7609746                           28   8.8  

>07_01_0702 +
           5288588-5288889,5289257-5289407,5289543-5289725,
           5290063-5290137,5290248-5290403,5290502-5290597,
           5290855-5290985,5291057-5291138,5291237-5291586,
           5293029-5293234,5293254-5293570
          Length = 682

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 250 YGYARLS-GRESSRRVTSVARPVQRPSDVAGRRRPFASGPNATPANMLGRXRCTPG 86
           Y  A++S  R S + V   A   Q P   A RR     GP   PA   G+ R + G
Sbjct: 501 YAAAQISTSRSSQQTVGQQATNWQNPRTAASRRGSIEPGPAPKPAARRGKPRRSAG 556


>04_01_0585 - 7608929-7609157,7609559-7609746
          Length = 138

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 256 PHYGYARLSGR-ESSRRVTSVARPVQRPSDVAGRRRPFASGPNATPANMLGRXRCTPGTL 80
           P +G A   GR +++  V +VAR  +      G+R+P   G  A     LGR    PG  
Sbjct: 17  PDHGGATAEGRWDAANAVEAVAR--REVDGDGGKRQPTEGGEMAAARERLGREWLRPGWA 74

Query: 79  A 77
           A
Sbjct: 75  A 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,486
Number of Sequences: 37544
Number of extensions: 311028
Number of successful extensions: 993
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)