Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N16
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   128   1e-30
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.86 

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  128 bits (308), Expect = 1e-30
 Identities = 57/81 (70%), Positives = 66/81 (81%)
 Frame = +3

Query: 87  LAIDLLRSFPMASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCST 266
           LA+DLL      SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C++
Sbjct: 3   LAVDLLNP-SHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCAS 61

Query: 267 ILCQPTGGRARLTEGCSFRRK 329
           +LCQPTGG+ARL EGCSFRRK
Sbjct: 62  VLCQPTGGKARLMEGCSFRRK 82


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 846 PXXPGGGGFXXXKKXPXPPPPXXEKKKK 763
           P  P   GF    + P PPPP   KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,279
Number of Sequences: 5004
Number of extensions: 36718
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)