Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N16
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   128   6e-30
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    54   1e-07
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     52   6e-07
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    28   8.5  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  128 bits (309), Expect = 6e-30
 Identities = 58/79 (73%), Positives = 64/79 (81%)
 Frame = +3

Query: 93  IDLLRSFPMASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 272
           IDLL   P   E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+L
Sbjct: 7   IDLLNP-PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVL 65

Query: 273 CQPTGGRARLTEGCSFRRK 329
           CQPTGG+ARLTEGCSFRRK
Sbjct: 66  CQPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/47 (55%), Positives = 31/47 (65%)
 Frame = +3

Query: 93  IDLLRSFPMASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 233
           IDLL   P   E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNP-PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 24/40 (60%), Positives = 28/40 (70%)
 Frame = +3

Query: 93  IDLLRSFPMASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 212
           IDLL   P   E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNP-PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 172 ELGCGTSRLSLCFLLSDAM-GKDRNKSIASWHGY 74
           ELG   SR SL FLLS  +  KD N++   W  Y
Sbjct: 740 ELGLNVSRTSLDFLLSACVKAKDSNRAQLIWTEY 773


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,827,993
Number of Sequences: 37544
Number of extensions: 367259
Number of successful extensions: 1101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)