Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_N15
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 261 6e-70
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 258 4e-69
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.17
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.23
08_02_1278 - 25838146-25839411 32 0.53
03_05_0366 - 23505755-23506441 31 1.2
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 1.6
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 29 3.8
09_04_0384 - 17153064-17154233 29 5.0
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 261 bits (639), Expect = 6e-70
Identities = 124/224 (55%), Positives = 150/224 (66%), Gaps = 1/224 (0%)
Frame = +1
Query: 223 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 402
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 403 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 582
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 583 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 762
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 763 PLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRF 891
PLI++ + + +AFRN+PGV+ APGGHLGRF
Sbjct: 211 PLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRF 254
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 258 bits (632), Expect = 4e-69
Identities = 124/224 (55%), Positives = 149/224 (66%), Gaps = 1/224 (0%)
Frame = +1
Query: 223 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 402
V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 30 VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 89
Query: 403 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 582
+GQGAFGNMCRGGRMFAPTK WRRWH ARGH IE
Sbjct: 90 AGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEG 149
Query: 583 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 762
+PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKG
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKG 209
Query: 763 PLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRF 891
PLI++ + + +AFRN+PGV+ APGGHLGRF
Sbjct: 210 PLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRF 253
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 334 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 444
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 440 PPRHMLPKAP*PDLWVPPP 384
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2
Query: 663 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 556
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 220 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 396
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 397 HRSGQGA 417
+ + + A
Sbjct: 168 NDNDEEA 174
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -2
Query: 657 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 490
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 489 DATVPAP 469
A AP
Sbjct: 134 SAPAKAP 140
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 324 VTSLLAHAVRLPRVLGHRNVNIIDQVRTYGRLEHEXGGAWLHPA 193
+TS+ H RL L R++ + +R YG HE G A+ PA
Sbjct: 343 LTSVAGHYGRLDGDLVVRSLTFVSNMRAYGPFGHEDGVAFDLPA 386
>09_04_0384 - 17153064-17154233
Length = 389
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 865 PASVGSACXISGAPHPGCCGRRVSDPDPC*RL 770
P + S GA P C GRR SDPD RL
Sbjct: 111 PIAAASLQIAKGALWPRCWGRRPSDPDRARRL 142
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +1
Query: 256 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 426
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 427 MCRGGRMFAPTKPWRRW 477
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 319 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 423
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,756,618
Number of Sequences: 37544
Number of extensions: 601787
Number of successful extensions: 2038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -