Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_N15
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 262 2e-70
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 32 0.63
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 30 2.6
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 30 2.6
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 30 2.6
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 30 2.6
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 30 2.6
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 30 2.6
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 2.6
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 5.9
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 29 5.9
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 29 5.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.9
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 5.9
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 29 5.9
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 262 bits (642), Expect = 2e-70
Identities = 124/222 (55%), Positives = 152/222 (68%)
Frame = +1
Query: 223 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 402
VF+ PIRPDLV+ + + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26 VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85
Query: 403 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 582
SGQGAFGNMCRGG MFAP K +RRWH QARGH+I++
Sbjct: 86 SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145
Query: 583 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 762
+ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+ G
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLG 205
Query: 763 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 888
P++I+ +D RAFRNIPGV+ APGGHLGR
Sbjct: 206 PVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGR 247
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.9 bits (69), Expect = 0.63
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = +1
Query: 202 QPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV 381
+PS S+ AP +P + N R V K H+ SW T + R
Sbjct: 111 KPSVSKIAEAAP-KPIFKVARGTVKTVNKRGTKGVQKMPNHRLEGNSWETNGLQNQTARG 169
Query: 382 RGGGTHR---SGQGAFGNMCRGGRMFAPTKP 465
GGG R SG G RGGR KP
Sbjct: 170 GGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 SSEMSLSVARPLXSVYSEKSETVQGAAKPLPXRVQGAHTSGP 251
SS+ V++ L + Y +K E +P VQG TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 SSEMSLSVARPLXSVYSEKSETVQGAAKPLPXRVQGAHTSGP 251
SS+ V++ L + Y +K E +P VQG TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 SSEMSLSVARPLXSVYSEKSETVQGAAKPLPXRVQGAHTSGP 251
SS+ V++ L + Y +K E +P VQG TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 SSEMSLSVARPLXSVYSEKSETVQGAAKPLPXRVQGAHTSGP 251
SS+ V++ L + Y +K E +P VQG TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 SSEMSLSVARPLXSVYSEKSETVQGAAKPLPXRVQGAHTSGP 251
SS+ V++ L + Y +K E +P VQG TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 SSEMSLSVARPLXSVYSEKSETVQGAAKPLPXRVQGAHTSGP 251
SS+ V++ L + Y +K E +P VQG TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -2
Query: 300 VRLPRVLGHRNVNIIDQVRTYGRLEHEXGGAWLH-PAPSRSSLNTPTXKVGLPIDSFRYF 124
+ PR IID +YG L +E H P S +++ P + L +F
Sbjct: 274 IETPRAYHRETEEIIDDTASYGDLRNESRMNSPHRPGLSNRNMSQPVSGISLLSQTFLEQ 333
Query: 123 SEAIPPKYT 97
+ PPK+T
Sbjct: 334 NLPEPPKFT 342
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 604 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 780
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 781 KD 786
KD
Sbjct: 473 KD 474
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 883 PNDLPEPASVGSACXISGAPHP 818
P ++P+ A + C +SG PHP
Sbjct: 773 PREVPQGADLTLVCSVSGTPHP 794
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 883 PNDLPEPASVGSACXISGAPHP 818
P ++P+ A + C +SG PHP
Sbjct: 788 PREVPQGADLTLVCSVSGTPHP 809
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 883 PNDLPEPASVGSACXISGAPHP 818
P ++P+ A + C +SG PHP
Sbjct: 16599 PREVPQGADLTLVCSVSGTPHP 16620
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 883 PNDLPEPASVGSACXISGAPHP 818
P ++P+ A + C +SG PHP
Sbjct: 16614 PREVPQGADLTLVCSVSGTPHP 16635
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 604 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 780
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 781 KD 786
KD
Sbjct: 473 KD 474
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 840 TFQELHTR--DVAEGACQTLILVEDYEGPLTLDTTTVAHFTL 721
T + LH + E + + L++++ +E TL TTVA+F+L
Sbjct: 290 TLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 348 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 458
YRTCC+ C ++++ + +GC R + + Y PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,745,119
Number of Sequences: 27780
Number of extensions: 428210
Number of successful extensions: 1170
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -