Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N14
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    27   3.6  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    27   3.6  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    27   4.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   8.2  

>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 121 VLLFAILAASCN*FVYTTLKNDNQNLK 41
           V LF + A SC  F+Y   + D Q LK
Sbjct: 11  VWLFLLAAVSCTLFIYGVTRTDLQTLK 37


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 147 DLFQSLGPGY-YYLPSWLQVAISLFIQHLK 61
           DLF     G+ Y +  W +  + +FIQHLK
Sbjct: 126 DLFDIYHAGFRYQVEGWPENPVDIFIQHLK 155


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 159 AVVVDLFQSLGPGYYY---LPSWLQVAISLFIQHLKTT 55
           + +VD+ +SL PG+ +   LP  + V     ++HLK +
Sbjct: 390 STLVDMIRSLAPGFIFTTSLPPHVMVGALTAVEHLKVS 427


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 153 VVDLFQSLGPGYYYLPSWLQVAISL 79
           +VD   SL PGY YLP  LQ + +L
Sbjct: 512 LVDQIWSLLPGYCYLPLDLQSSFTL 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,699
Number of Sequences: 5004
Number of extensions: 36208
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)