Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_N13
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 46 5e-06
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 44 2e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 39 8e-04
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 37 0.003
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 37 0.003
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 35 0.017
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 33 0.070
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.16
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 31 0.28
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 30 0.49
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.86
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 29 0.86
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 28 2.0
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 2.6
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 2.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 27 3.5
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 3.5
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 4.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 6.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.1
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 8.0
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 8.0
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 8.0
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 8.0
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 26 8.0
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 46.4 bits (105), Expect = 5e-06
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 632 KSKHEGAASKKYICEV--CDRSFVAAQFLKSHMQTHSATSTINCELCNKSFTGQ 787
K+K E + Y+C C++ F A LKSHM TH+ C +C KSF Q
Sbjct: 559 KAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQ 612
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +2
Query: 539 TSTKDAPKKRRKFKCD--QCDVKVNSQYHLDIHKSKHEGAASKKYICEVCDRSFVAAQFL 712
+ K K + + C C+ + Y+L H + H + + C +C +SF
Sbjct: 558 SKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNY--RPFQCSICKKSFARQHDK 615
Query: 713 KSHMQTHSATSTINCELCNKSF 778
+ H Q H+ C CN+ F
Sbjct: 616 RRHEQLHTGIKAFACVTCNQRF 637
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 521 IPPPEQTSTKDAPKKRRKFKC--DQCDVKVNSQYHLDIHKSKHEGAASKKYICEVCDRSF 694
IPP S P+ K+ C + C+ ++ +Y+++ H H + + Y C++C F
Sbjct: 425 IPPETMASLYCGPEADGKYVCLYNGCNKRIARKYNVESHIQTH--LSDRPYRCDLCKAGF 482
Query: 695 VAAQFLKSHMQTHSATSTINCELCNKSF 778
V LK H++ H CE C K F
Sbjct: 483 VRHHDLKRHLRIHENGRPYVCE-CLKRF 509
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 653 ASKKYIC--EVCDRSFVAAQFLKSHMQTHSATSTINCELCNKSFTGQAYLK 799
A KY+C C++ ++SH+QTH + C+LC F LK
Sbjct: 439 ADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLK 489
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 39.1 bits (87), Expect = 8e-04
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Frame = +2
Query: 446 CDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKKRRKFKC--DQCDVK---VNS 610
C+ +D L+ H +G +L + + +R K+ C D C K S
Sbjct: 31 CEQDLLTLDNLV-HHIHNGTTSNLRLISNINSILDHIGNRRPKYTCEWDDCPRKGMVQTS 89
Query: 611 QYHLDIHKSKHEGAASKKYICEV--CDRSFVAAQFLKSHMQTHSATSTI 751
++ L H H G K +IC V CDRSF + L HM+T T+
Sbjct: 90 RFALVAHLRSHTG--EKPFICSVPECDRSFTRSDALAKHMRTVHEADTL 136
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +2
Query: 569 RKFKCDQ--CDVKVNSQYHLDIHKSKHEGAASKKYICEVCDRSFVAAQFLKSHMQTHSAT 742
R F CD C + HL IHK H + CD F Q L+ H++ H
Sbjct: 51 RPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKP 110
Query: 743 STINC--ELCNKSFTGQAYLK 799
C E C++ F+ L+
Sbjct: 111 KPYACTWEGCDECFSKHQQLR 131
Score = 36.3 bits (80), Expect = 0.006
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Frame = +2
Query: 404 MKRQQNESRYRCDV--CDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKKRRKF 577
++ NE + CD C F +L +HK+ H N K F
Sbjct: 44 LRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKP--------------------F 83
Query: 578 KC--DQCDVKVNSQYHLDIHKSKHEGAASKKYIC--EVCDRSFVAAQFLKSHM 724
C D CD + +Q HL+ H H K Y C E CD F Q L+SH+
Sbjct: 84 SCHYDGCDAQFYTQQHLERHIEVHR--KPKPYACTWEGCDECFSKHQQLRSHI 134
Score = 35.1 bits (77), Expect = 0.013
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +2
Query: 671 CEVCDRSFVAAQFLKSHMQTHSAT----STINC--ELCNKSFTGQAYLKLPCSYI 817
C +C R F A L+ H+ H T T +C E C KSFT + LK S I
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVI 260
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 632 KSKHEGAASKKYIC--EVCDRSFVAAQFLKSHMQTHSATSTINCEL--CNKSFTGQAYLK 799
+SK+ +A K + C E C + + L+ H++THS C+ C+K+F +++LK
Sbjct: 12 ESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLK 71
Query: 800 L 802
+
Sbjct: 72 I 72
Score = 33.9 bits (74), Expect = 0.030
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +2
Query: 581 CDQCDVKVNSQYHLDIHKSKHEGAAS--KKYIC--EVCDRSFVAAQFLKSHMQT-HSATS 745
C C + + HL H H+ K Y C E C +SF + LK H+ H
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 746 TINCELCNKSF 778
+C+ C F
Sbjct: 266 AFHCDSCGTKF 276
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 37.1 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 659 KKYICEVCDRSFVAAQFLKSHMQTHSATSTINC 757
K+Y+CE C R+F + LK H+++H+ C
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 416 QNESRYRCDVCDLTFQAMDYLILHKKFHGNEK 511
Q +Y C+ C F +++L H + H NEK
Sbjct: 65 QKVKQYVCETCTRAFARLEHLKRHIRSHTNEK 96
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 34.7 bits (76), Expect = 0.017
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 680 CDRSFVAAQFLKSHMQTHSATSTINCELCNKSF 778
C +SF + L+ H +TH +C CN++F
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAF 65
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 572 KFKCD--QCDVKVNSQYHLDIHKSKHEGAASKKYICEVCDRSFVAAQFLKSHMQ 727
+F C C + HL H+ HE K + C C+R+F + L H+Q
Sbjct: 25 RFYCTYPDCPKSFTRKEHLRRHERTHENV--KAFSCSFCNRAFARSDVLNRHVQ 76
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 32.7 bits (71), Expect = 0.070
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 566 RRKFKCDQCDVKVNSQYHLDIHKSKHEGAASKKYICEVCDRSFVAAQFLKSHMQT-HSAT 742
+R F CDQC + +L HK+ H A + C C+ LK H+Q H+
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKA--EPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Query: 743 STI 751
S I
Sbjct: 86 SVI 88
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 431 YRCDVCDLTFQAMDYLILHKKFHGNEKDLPIPPPE-QTSTKDAPKKR-RKFKCDQCDVKV 604
+ CD C F + L HK H + +P P E + KD K+ ++F D+ ++
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKSVIEE 90
Query: 605 NSQYHLDIHKSKHEGAASKKYI 670
S+ LD+ + + + K +
Sbjct: 91 GSKDVLDVKAAASQQEDNMKIV 112
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 632 KSKHEGAASKKYICEV--CDRSFVAAQFLKSHMQTHSATSTINCELCNKSFT 781
KS+ +Y C+ C +SF + + H ++H+ + C C+ SFT
Sbjct: 6 KSRAYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFT 57
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 431 YRCDV--CDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKKRRKFKCDQCDVKV 604
Y+C V CD ++ + L HK HG+ + P P + + + ++C+ C +
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYHK-LHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRY 408
Query: 605 NSQYHLDIHKS 637
+ L H++
Sbjct: 409 KNLNGLKYHRT 419
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 641 HEG--AASKKYICEVCDRSFVAAQFLKSHMQTHS 736
H+G +K Y CEVC + + LK H +THS
Sbjct: 389 HQGFVVENKPYRCEVCSKRYKNLNGLKYH-RTHS 421
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 659 KKYICEVCDRSFVAAQFLKSHMQT-HSATSTINCELCNKSFTGQAYLK 799
K ++C C + F ++ L+ H+++ H++ C +C K F+ + L+
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLR 467
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.86
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Frame = +2
Query: 527 PPEQTSTKDAPKKRRKFKCDQCDVKVNSQYHLDIHKSKHEGAASKKYICEV--CDRSFVA 700
P T DAP R +KC C H H H G K ++C C + F
Sbjct: 13 PSRSTKNPDAP---RPYKCPLCTKAFYRLEHQTRHIRTHTG--EKPHVCTFPGCAKRFSR 67
Query: 701 AQFLKSHMQTHS 736
+ L H + H+
Sbjct: 68 SDELTRHARIHT 79
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 653 ASKKYICEVCDRSFVAAQFLKSHMQTHSATSTINCEL--CNKSFT 781
A + Y C +C ++F + H++TH+ C C K F+
Sbjct: 22 APRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFS 66
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 413 QQNESRYRCDVCDLTFQAMDYLILHKK 493
Q+N S+YRC CD F ++ + HK+
Sbjct: 13 QKNASKYRCPRCDSRFCCLECNLEHKR 39
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 383 NGENSYDMKRQQN--ESRYRCDVCDLTFQAMDYLILHKK 493
NG + + +Q N + +RCD CD+ F L HK+
Sbjct: 121 NGTSVANASKQPNMPNATFRCDKCDMMFVKQSGLTNHKR 159
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -3
Query: 769 VAQLTVYSTCRRMGLHVALQELCGHKASVAYFANVFL*SCTFVLAFVY 626
+ ++ + S C L A+ LCG V YF V C+ V Y
Sbjct: 190 IGRIGLRSECLASALRRAINNLCGPDEGVLYFLEVLKQICSVVYVDSY 237
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 728 THSATSTINCELCNKSFT-GQAYLKLPCSY 814
T AT + C +C +SFT G + LPC +
Sbjct: 312 TRRATFGVECVICLESFTKGDKVVALPCKH 341
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 515 LPIPPPEQTSTKDAPKKRRKFKCDQCDVKVNSQYHLDIHK 634
LPIPP E+ P+ R F+ D +V + Y D +
Sbjct: 1930 LPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFRE 1969
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 414 CLFIS*EFSPLYSAIFSRFTVERSLLSLPAGSIML 310
C S +F+PL + IFS + R LS P+ S+ +
Sbjct: 150 CPLGSVQFNPLLAEIFSLYNTLRDGLSAPSNSVQV 184
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 584 DQCDVKVNS--QYHLDIHKSKHEGAASKKYICEVCDRSFVAAQFLKSHMQTHSATSTINC 757
DQC + V S H D+ S ++ +K+ +CD +A + ++ + + T +N
Sbjct: 450 DQCYILVFSLMMLHTDVFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYDNITFTPFVNL 509
Query: 758 E 760
+
Sbjct: 510 D 510
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 557 PKKRRKFKCDQCDVKVNSQYHLDIHK-SKHEGAASKKYICEVCD 685
P+ +C+ C + YH K SK + A +K+IC +CD
Sbjct: 1179 PEAGMMIECELC----HEWYHAKCMKMSKKKLRADEKFICPICD 1218
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 443 VCDLTFQAMDYLILHKKFHGNEKDLPIPPPEQTSTKDAPKKRRKFKCDQCDVKVNSQYHL 622
V TF + +Y H K LP+P + ST PK K + D+ +S
Sbjct: 67 VKQFTFSSKEYNS-HNKHALQNSQLPLPKTPEKSTVHRPKAN---KVEVTDLPSSSSVE- 121
Query: 623 DIHKSKH 643
+H SKH
Sbjct: 122 HLHTSKH 128
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 308 KSMMEPAGNDNSDRSTVKREKM-AEYNGENSYDMKRQQNESRYR 436
K + +P + N++ + ++ M A + YD ++++ S YR
Sbjct: 22 KVLEQPKNSSNTNEESSSQDNMKASFGSSKRYDERQKKKRSEYR 65
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 649 TFVLAFVYV*MILRVYFHIALVTFEF 572
T VL F YV ++ VYF +L+ F
Sbjct: 115 TIVLIFTYVMTVIIVYFSFSLIKLAF 140
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 649 TFVLAFVYV*MILRVYFHIALVTFEF 572
T VL F YV ++ VYF +L+ F
Sbjct: 115 TIVLIFTYVMTVIIVYFSFSLIKLAF 140
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 665 YICEVCDRSFVAAQFLKSHMQTHSATS 745
+ C C+R F + + +++HMQ TS
Sbjct: 259 FTCLTCNREFKSLEAVRAHMQQKGHTS 285
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 377 EYNGENSYDMKRQQNESRYRCDVCDL 454
E + +NS+ M +++E+ + C+VC +
Sbjct: 53 ENDRDNSHTMNSKRDEAGFACEVCQI 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,654,783
Number of Sequences: 5004
Number of extensions: 79347
Number of successful extensions: 264
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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