Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N09
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022505-1|AAH22505.1|  327|Homo sapiens vacuolar protein sortin...    32   3.2  
AL596223-4|CAH71501.1|  327|Homo sapiens vacuolar protein sortin...    32   3.2  
AL442635-2|CAH71779.1|  327|Homo sapiens vacuolar protein sortin...    32   3.2  
AF175266-1|AAF89954.1|  327|Homo sapiens vacuolar sorting protei...    32   3.2  
AK022992-1|BAB14351.1|  327|Homo sapiens protein ( Homo sapiens ...    30   9.9  

>BC022505-1|AAH22505.1|  327|Homo sapiens vacuolar protein sorting
           26 homolog A (S. pombe) protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 520 GQKNKFRDVCNYYHRLELLEEQLSPNKRATSRHYEFNMINNPPPKSSYLKA 672
           GQ   F D  N +  + L++E   P +   SR Y+F  +    P  SY+ A
Sbjct: 74  GQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGA 124


>AL596223-4|CAH71501.1|  327|Homo sapiens vacuolar protein sorting
           26 homolog A (S. pombe) protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 520 GQKNKFRDVCNYYHRLELLEEQLSPNKRATSRHYEFNMINNPPPKSSYLKA 672
           GQ   F D  N +  + L++E   P +   SR Y+F  +    P  SY+ A
Sbjct: 74  GQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGA 124


>AL442635-2|CAH71779.1|  327|Homo sapiens vacuolar protein sorting
           26 homolog A (S. pombe) protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 520 GQKNKFRDVCNYYHRLELLEEQLSPNKRATSRHYEFNMINNPPPKSSYLKA 672
           GQ   F D  N +  + L++E   P +   SR Y+F  +    P  SY+ A
Sbjct: 74  GQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGA 124


>AF175266-1|AAF89954.1|  327|Homo sapiens vacuolar sorting protein
           26 protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 520 GQKNKFRDVCNYYHRLELLEEQLSPNKRATSRHYEFNMINNPPPKSSYLKA 672
           GQ   F D  N +  + L++E   P +   SR Y+F  +    P  SY+ A
Sbjct: 74  GQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGA 124


>AK022992-1|BAB14351.1|  327|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to
           H58 PROTEIN. ).
          Length = 327

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 520 GQKNKFRDVCNYYHRLELLEEQLSPNKRATSRHYEFNMINNPPPKSSYLKA 672
           G+   F D  N +  + L++E   P +   SR Y+F  +    P  SY+ A
Sbjct: 74  GRIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGA 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,446,587
Number of Sequences: 237096
Number of extensions: 2672908
Number of successful extensions: 8994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8991
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)