Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N07
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    43   5e-05
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    40   5e-04
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    32   0.092
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   4.6  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   4.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   4.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.0  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   6.0  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   6.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.0  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   8.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   8.0  

>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = +3

Query: 201 IPENVTKNESSKPRKYKSKRVRTSFTWDQQLMLEETFEKTQYITGIDRRELAQKL--GIG 374
           I  N  KN   +    K +R RT  T  +  +LE+ F KT   + I+R+EL++KL   + 
Sbjct: 18  ISNNEAKNHEDEETHQKKRRRRT--TDAEATLLEQYFLKTPKPSLIERQELSKKLKSSMT 75

Query: 375 EKCIKIWFQNRRMKNKRKS 431
            + ++IWFQN+R   +R +
Sbjct: 76  PRELQIWFQNKRQSLRRSN 94


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = +3

Query: 207 ENVTKNESSKPRKYKSKRVRTSFTWDQQLMLEETFEKTQYITGIDRRELAQKLGIGEKCI 386
           E+ T          KSK+ R   T DQ   L   F K        R ++ ++L I E+ +
Sbjct: 153 ESGTPESGGSTSAPKSKKQR--LTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSV 210

Query: 387 KIWFQNRRMKNK 422
            IWFQNRR K+K
Sbjct: 211 TIWFQNRRAKSK 222


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 441 SDSYTEAECSSTSDTPKPVPARIS-SAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVRPS 617
           S+ YT +  SS    P   PAR   +A+N  +  N  V   +V    F++   TQ     
Sbjct: 325 SNLYTNSNSSSIVQNPLQ-PARTGPAAINYNYTTNYSVSSPSVTNPFFDVGSSTQNASLM 383

Query: 618 YDTGFPYDTNMYPTQYYPNN 677
             TG+P   N     YY N+
Sbjct: 384 GSTGYPSSAN---NVYYENS 400


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 30/113 (26%), Positives = 47/113 (41%)
 Frame = +3

Query: 309 FEKTQYITGIDRRELAQKLGIGEKCIKIWFQNRRMKNKRKSSESSDSYTEAECSSTSDTP 488
           FE  +Y+     REL ++ G+           R   +   SS+   S  E   S T + P
Sbjct: 111 FESREYVF----RELLREHGLDPVLANTKLSQRHSASFFPSSQEP-SIPENPSSLTGEKP 165

Query: 489 KPVPARISSAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVRPSYDTGFPYDTN 647
             + ARI SA+N  F  ++ + PS++   L  +      V  S  +  P D N
Sbjct: 166 H-LYARIDSAINEPFTPSDRLSPSSL-VPLLKLPALDHAVSSSSSSDLPSDPN 216


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 496 SLQEYLVQLT*H----FHITNMFYLVMLEGICLILLKVLNSSD 612
           SL  ++VQ T H    F+IT+ F+++ L  + LIL + L+ S+
Sbjct: 300 SLSGFIVQYTPHMYYVFYITSTFWIIYLLYVWLILPESLDVSE 342


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 568 PTLLGKTYSLCGNVMLTALDILAGTGFGVSDVDEHSASVYE-SLDSEDFLLFFIL 407
           P L+GK Y  C   + TAL  L   G    +V +  A+++   + S +FL+  I+
Sbjct: 303 PWLVGKLYKWCKEEVFTALGGLVHEGVSRREVAQVMATLFTIHIASMEFLIAEII 357


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 204 PENVTKNESSKPRKYKSKRVRTSFTWDQQLMLEETFEK 317
           PE   K  S  P+KYKS RV  +++     +++E FE+
Sbjct: 299 PEEYLKQSSDFPKKYKSLRVVPAYS----NLIKEKFER 332


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 415  RTKENLQSLVIRILKQ-NAHLHLILQNLSLQEYLVQLT*HFHITNMFYLVMLEGICLILL 591
            R K+ L ++    +K+   +  ++L  + L E  +Q+     + N F     +GIC++LL
Sbjct: 906  RVKKALPNVTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKNEFLKSNTDGICIVLL 965

Query: 592  KV 597
             +
Sbjct: 966  DI 967


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 486 PKPVPARISSAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVR-PSYD 623
           P P+   ++ A N+  PH+   +P     + F +++    VR PS+D
Sbjct: 166 PTPLNKFLAGAENVDIPHSLRPVPRREHSSQFQVSEKRTLVRLPSFD 212


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 420 KRKSSESSD--SYTEAECSSTSDTPKPVPARISSAV 521
           K+K +ESS+  ++TE + SS+     P+P   SS +
Sbjct: 15  KKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQI 50


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 405 RRMKNKRKSSESSDSYTEAECSSTSDTPKPVPARISSAVNM 527
           ++ K K+KS++ S    E E SST D    +  +   + NM
Sbjct: 116 KKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENM 156


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 360 KLGIGEKCIKIWFQNRRMKNKRKSSESSDSYTEAECSSTSDTPKPVPARISSAV--NMTF 533
           KL IGE CI ++    ++  K        S   +  +      K VP  I S V  N++ 
Sbjct: 311 KLNIGEFCISLYLIKLKLSGKELPKVLPSSML-SSVAPLMQKSKSVPTSIPSVVPANISS 369

Query: 534 PH-NEYVLPSNVGRNLFNIAQGTQFVRPSYDTGFPYDTNMYPTQYYPNNITAY 689
           P+ N  + P+  G +   +  GT+ +  S D   P+   + P Q+  +N T +
Sbjct: 370 PNPNPTLAPNPTGPS--RVTSGTEDLL-SLD-ATPFSPTLAP-QHTSSNATKH 417


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 639 DTNMYPTQYYPNNITAYYDS 698
           D+  YPT  YP+N+ A  DS
Sbjct: 390 DSATYPTSIYPSNVRARDDS 409


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +3

Query: 168 KNQHFATPWPAIPENVTKNESSKPRK--YKSK--RVRTSFT--WDQQLMLEETFEKTQYI 329
           K QH   P   I     +  S +  K  +K K  ++R+     W+Q +M EE  E TQ  
Sbjct: 30  KEQHCYVPMRTIGRLRLRKSSDQTEKKCWKEKLMKIRSELEELWEQSMMYEEQKELTQLG 89

Query: 330 TGIDR 344
             +DR
Sbjct: 90  EMLDR 94


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 520  TALDILAGTGFGVSDVDEHSASVYE 446
            TA+  LAG+G G S + E + + YE
Sbjct: 1463 TAVPTLAGSGMGTSQLPEGAGTPYE 1487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,629
Number of Sequences: 5004
Number of extensions: 69557
Number of successful extensions: 247
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)