Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N05
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.6  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 665 IVVLSAGADGSCRIWSAETGINPVLLKGHTMSISDISIID 784
           I ++    D   R+W  +TG++ +L     +    I IID
Sbjct: 110 INIIRVRVDACDRLWGVDTGVDDILGNNTVIHQPRIIIID 149


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 ISSKVLNELSTQDTLTRSGNKSDGNIKINISKNYE 406
           I   VL++  T   +      SD N+ I ISK ++
Sbjct: 87  IVQAVLDDNETDQLIVECSPISDANVHIKISKIFQ 121


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 728 LFLSQLTIFYMSHLLLPTV 672
           + + + T+FY  +L+LPTV
Sbjct: 227 IIIRRKTLFYTVNLILPTV 245


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 659 SGIVVLSAGAD 691
           +GIVV+SAGAD
Sbjct: 318 AGIVVISAGAD 328


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 180 QFWERNSMITQLSIENIQNV 121
           +FWER ++     IENI ++
Sbjct: 186 EFWERRTLQISDGIENIGSI 205


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 180 QFWERNSMITQLSIENIQNV 121
           +FWER ++     IENI ++
Sbjct: 239 EFWERRTLQISDGIENIGSI 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,693
Number of Sequences: 438
Number of extensions: 5361
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)