Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_N03
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 110 2e-25
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 68 2e-12
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 2.8
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.8
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 3.7
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 3.7
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 4.9
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 6.5
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 8.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 8.6
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 110 bits (265), Expect = 2e-25
Identities = 56/115 (48%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Frame = +2
Query: 197 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWF 373
MKI+ S H F +P+E V+ A W+KYPN VI D ++RKV+D GVL+T RL++
Sbjct: 1 MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQA 60
Query: 374 FPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHP 538
PRW LI A+ CY E S V+ R +TL T+NLTF + VDETV Y+PHP
Sbjct: 61 LPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP 115
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 67.7 bits (158), Expect = 2e-12
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = +2
Query: 203 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFP 379
I T + N W TV+ A +YPNP + V+ DV+ER V D G L+T RL+ + P
Sbjct: 4 ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQGRLP 63
Query: 380 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSEFLKNI 559
RWA L+ K Y E S ++P ++++ +T NL + V E R+ K I
Sbjct: 64 RWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRVIEYSRFIQSSENCSKTI 122
Query: 560 TKT 568
T
Sbjct: 123 VDT 125
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.8
Identities = 26/117 (22%), Positives = 47/117 (40%)
Frame = +2
Query: 149 RSLSLYCNLH*ILEKNMKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVV 328
R + Y N +L K KI + + + P A RKYP P IGTD +
Sbjct: 316 RKMCNYHNPSILLIKAKKINANHKSSSRPISLDATIP-RKYP----PHCIGTDKAVPQKF 370
Query: 329 DGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHY 499
H ++ + RW Q+ +G +++ + ++ PI + + +C +
Sbjct: 371 GADFHNENILLGAYISTRWRQSHMGFFG-DHSTLLFQLQPIHQVYYASNLDKNYCMF 426
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 230 HPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFFPRWAQALIGTA 409
H W+ + YPN AV ++ G +H L+ S+ WA A++G A
Sbjct: 431 HIWQAMLLYVTDAYPNVSASAVAAFELPSNLGAVGFIHLSALMFSR-MNVHWATAVVGFA 489
Query: 410 KI 415
+
Sbjct: 490 SL 491
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -3
Query: 750 NNSSVLLQAELASSLISVSNFPYNPFYSLPS 658
N+S+ LLQ E SSL S+F +PF+ LPS
Sbjct: 172 NSSNSLLQTE--SSLRPNSSFVNSPFFPLPS 200
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 218 VLMSKSSCFFLISNANCSIEIRISKT*KVIFTY 120
V SKS+ F LIS+ N SI + +T K++ +Y
Sbjct: 186 VKTSKSASFSLISSLNSSIHLLDQETGKILKSY 218
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 515 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 417
FH Q N D++L + FL V ++G+L +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 227 NHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTH 349
+HP T A PNP+ P+ + DV + +D ++ H
Sbjct: 165 SHPIPTPAIQRTSSIPNPLTPSYVVFDVAKPVPIDVNIYDH 205
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -2
Query: 658 LCQHLEKFCWLKGLPCNXLRGTPCTVTTASCFSNVFEEF 542
LC L++ CW P L T V SCF F
Sbjct: 235 LCSSLKRICWELYDPSRSLDETETDVEVFSCFQPQLANF 273
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +2
Query: 317 RKVVDGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTN 481
RK+++ +LH+H +SS +F+ + + A + + +NP R + ++N
Sbjct: 42 RKIINEMLHSHSELSS-FFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSN 95
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 430 LTSITYFCSTN*RLGPSWKKPFGTDQSMSMKYTIYNFS 317
L+ IT F S+ + P+WKK FG + + ++KY + + S
Sbjct: 1649 LSEITLFPSS---VSPTWKKSFG-NANTNLKYGLEDMS 1682
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 430 LTSITYFCSTN*RLGPSWKKPFGTDQSMSMKYTIYNFS 317
L+ IT F S+ + P+WKK FG + + ++KY + + S
Sbjct: 1649 LSEITLFPSS---VSPTWKKSFG-NANTNLKYGLEDMS 1682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,581,073
Number of Sequences: 5004
Number of extensions: 72835
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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