Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N03
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   5.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   9.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 365 KWFFPRWAQAL 397
           K+FFP+W Q L
Sbjct: 648 KFFFPKWLQVL 658


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 750 NNSSVLLQAELASSLISVSNFPYNPFYSLPSFAS 649
           NN+   ++A   ++++S+ N  YN   SLP   S
Sbjct: 495 NNAVGEMEATNVTNILSMDNTQYNLDLSLPQLDS 528


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 806 GMISHLKQKSTLD 844
           GM+SH+ QK+TL+
Sbjct: 304 GMLSHILQKTTLN 316


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 714 LQVQPVKVQMNYYHKQRSQL 773
           +Q+ P+ ++   YHKQ+ +L
Sbjct: 127 IQICPIYIESFSYHKQKLRL 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,682
Number of Sequences: 438
Number of extensions: 5248
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)