Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N02
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.7  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   7.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   9.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 835 PPPPPXXXXXKXXGXXXPXXXKXXXPPPPP 924
           PPPPP            P   +   PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/56 (28%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
 Frame = +2

Query: 830 PPPPPPP--XXXXXKXXXXXXPXXXXXXXPPPPXXGXGGXXXXXXXXXXPPRXPPP 991
           PPPPPPP                      PPPP     G           P  PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
 Frame = +3

Query: 510 PPPPPPXXXXXKNKK-----QKXXXXXPPPPPP 593
           PPPPPP     + K             PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
 Frame = +3

Query: 498 KXXXPPPPPPXXXXXKNK---KQKXXXXXPPPPPP 593
           K   PPPPPP                   PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 252 PGXPXGGPPXXXXPPPXXGAGG 317
           PG    GPP    PPP   AGG
Sbjct: 768 PGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 252 PGXPXGGPPXXXXPPPXXGAGGGGXSPXXXP 344
           P    GGPP    PPP  G  G G  P   P
Sbjct: 754 PAPIMGGPPP---PPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 510 PPPPPPXXXXXKNKKQKXXXXXPPPPPP 593
           P P  P       ++QK     PPPPPP
Sbjct: 710 PSPLLPDVSDTVEEQQKLLLKSPPPPPP 737



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
 Frame = +2

Query: 830 PPPPPP----PXXXXXKXXXXXXPXXXXXXXPPPPXXGXGGXXXXXXXXXXPPRXPPP 991
           PPPPPP    P                    PPPP  G  G          PP  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG------AGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 511 PPPPPPXXXXXKTKNK 558
           PPPPPP     K KNK
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 510 PPPPPPXXXXXKNKKQKXXXXXPPPPPP 593
           PPPPPP          +     PPPPPP
Sbjct: 9   PPPPPPPPGF------EPPSQPPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 511 PPPPPPXXXXXKTKNK 558
           PPPPPP     K  N+
Sbjct: 309 PPPPPPSNDFWKDSNE 324



 Score = 21.4 bits (43), Expect(2) = 7.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +1

Query: 487 GGGXKXXXPPPPPP 528
           G       PPPPPP
Sbjct: 298 GDSANGGLPPPPPP 311


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 343 GXXXGEXPPPPAPXXGGGXXXXGGPPXGXPG 251
           G   G   PPP    GG     GG P   PG
Sbjct: 68  GITEGNAAPPPPGAEGGPGAGFGGFPGAGPG 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,829
Number of Sequences: 5004
Number of extensions: 50334
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)