Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_N02
         (1297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 831  PPPPPPP 851
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1275 PPPPPPP 1295
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1276 PPPPPPP 1296
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 831  PPPPPPP 851
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1275 PPPPPPP 1295
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 1277 PPPPPPP 1297
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 2.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 510  PPPPPP 527
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 2.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 576  PPPPPP 593
            PPPPPP
Sbjct: 1357 PPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 309 PPXXXXGXPXGGGPPGXXP 253
           PP    G P GG PPG  P
Sbjct: 39  PPNPSQGPPPGG-PPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,768
Number of Sequences: 438
Number of extensions: 10974
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44543373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)