Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M24
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.95 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   2.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.9  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   8.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 427 EVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV 606
           E+ K  K   E ++ +I +A    +EPT    +RQT +  V  +L  A+       KK +
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL 221


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 7/27 (25%), Positives = 20/27 (74%)
 Frame = +1

Query: 544 LVESLLGKAQTDYKNKIKKDVVLKVDT 624
           +V+++ G     +KN++++++ +K+DT
Sbjct: 58  IVKAISGVQTVRFKNELERNITIKLDT 84


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -2

Query: 241 FRC*TPPRPSHRFLRP----FRWPL 179
           FRC  PP P  RF+ P    FR PL
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRFRPPL 172


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 591 LILVVCLGFSEQGL 550
           L+LVVCLG + QG+
Sbjct: 5   LLLVVCLGIACQGI 18


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 57  FSWLYIGRFSVLVVLKI 107
           F+W ++  F+VL +LK+
Sbjct: 177 FTWFWVTPFTVLPLLKV 193


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 57  FSWLYIGRFSVLVVLKI 107
           F+W ++  F+VL +LK+
Sbjct: 177 FTWFWVTPFTVLPLLKV 193


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 678 PGCNQLDSTTGVGRQKVL-GVDFQHNIL 598
           PG  Q+DS+T  GR+     ++F  N L
Sbjct: 530 PGKIQMDSSTNFGREDFWNSINFNENKL 557


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = -3

Query: 747 SGSSCWGDQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVD 616
           +G+  WG +   R   + D+  +   N+L  T  + +  ++ +D
Sbjct: 62  TGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTID 105


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 678 PGCNQLDSTTGVGRQKVL-GVDFQHNIL 598
           PG  Q+DS+T  GR+     ++F  N L
Sbjct: 530 PGKIQMDSSTNFGREDFWNSINFNENKL 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,896
Number of Sequences: 438
Number of extensions: 3955
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)