Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M23
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968...    52   8e-07
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816...    50   2e-06
02_05_0391 + 28563242-28563302,28563714-28563931,28564563-285646...    42   7e-04
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870...    40   0.003
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    33   0.40 
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547...    31   0.93 
02_05_0985 - 33331257-33332498                                         29   4.9  

>04_04_0998 -
           29996117-29996242,29996345-29996486,29996613-29996812,
           29997112-29997497,29997769-29998318,29998949-29999296
          Length = 583

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 29/84 (34%), Positives = 43/84 (51%)
 Frame = +2

Query: 320 SYTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGE 499
           SYT   E     VL  + LP  YPS  PP F ++  WMD    + L K L  I+ +  G+
Sbjct: 161 SYTCNFEYLPPLVLTCL-LPLSYPSKEPPYFTVTVKWMDGPNVSQLCKMLDTIWAELPGQ 219

Query: 500 TVIFQWVEMIREVLQTVCKVEKKI 571
            V+++WVE +R   ++    + KI
Sbjct: 220 EVVYRWVESLRNSSRSYLWFDGKI 243


>04_04_0994 +
           29980076-29980441,29980900-29980998,29981075-29981612,
           29982211-29982494,29983014-29983034,29983238-29983452,
           29983538-29983691,29984089-29984220
          Length = 602

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 39/70 (55%)
 Frame = +2

Query: 323 YTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGET 502
           Y  R+E +   +LL   LP  YPS  PP F +SA WM++   ++L + L  ++ +  G  
Sbjct: 195 YKFRVE-HLPPILLTCLLPSPYPSHQPPLFTISAEWMNKMMVSSLCQMLDTVWEEQKGVE 253

Query: 503 VIFQWVEMIR 532
           V +QW + ++
Sbjct: 254 VTYQWAQWLQ 263


>02_05_0391 +
           28563242-28563302,28563714-28563931,28564563-28564637,
           28564730-28565264,28565343-28565523,28565586-28565724,
           28565826-28566067,28566157-28566322,28566591-28566698
          Length = 574

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 356 VLLYVTLPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDN-VGETVIFQWVEMIR 532
           V+L   LP  YPS   P F ++A W+D    ++    L EI+ +   G+ V+++WV+ + 
Sbjct: 168 VVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQEVVYKWVDWL- 226

Query: 533 EVLQTVCKVEKKIEVTEPEVDS 598
                 C       V  P+ DS
Sbjct: 227 STSSWFCIASDDQIVFGPDADS 248


>04_04_0995 +
           29985473-29985625,29986372-29986446,29986537-29987044,
           29987349-29987734,29988418-29988641,29988728-29988893,
           29989095-29989226
          Length = 547

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +2

Query: 374 LPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQTVC 553
           +P  YPS   P F LS+ W+D    ++L   L  I+   +G  V++ WV+ ++    +  
Sbjct: 123 MPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQLGLEVVYGWVQWLQSSALSHL 182

Query: 554 KVEKKIEVTEPE 589
                I + +P+
Sbjct: 183 GFNDGIVIQQPD 194


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 410 FELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMI 529
           + L+A W+D    + L   L E++ +  G+ VI++WV+ +
Sbjct: 148 YHLAAKWLDEPKVSYLCAALDEVWTELPGQEVIYRWVDWL 187


>08_02_0204 - 14253258-14253383,14253685-14253878,14254029-14254743,
            14254811-14254837,14258779-14258838,14263174-14264844,
            14267402-14267518,14267593-14267763,14270248-14270346,
            14271684-14271770,14272392-14272475,14272929-14273068,
            14274414-14274494,14275492-14275680,14275986-14276022
          Length = 1265

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 12/44 (27%), Positives = 29/44 (65%)
 Frame = +2

Query: 230  VDNLSRQAEEIEALKSIYTEELTIDSEITRSYTIRIEENKKEVL 361
            V+ L+   E ++ LK    EE+ +++    SYT+R+++++++V+
Sbjct: 918  VEQLTIPKEFVQRLKGDIPEEIQLETHNRNSYTVRVDKSQEKVI 961


>02_05_0985 - 33331257-33332498
          Length = 413

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 500 TVIFQWVEMIREVLQTVCKVEKKIEVTEPEVDSLD--LTTIEINCPENY 640
           T +F+  EM++E++Q    VE KIE T  E++SLD  L  +   C  +Y
Sbjct: 293 TSLFKVFEMVQEMVQDYTGVE-KIEDTWTELESLDGRLFFVGRGCSRSY 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,405
Number of Sequences: 37544
Number of extensions: 296507
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)