Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M23
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032654-2|CAA21718.1|  257|Caenorhabditis elegans Hypothetical ...    83   3e-16
AL032654-3|CAE54915.1|  101|Caenorhabditis elegans Hypothetical ...    81   8e-16
U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL032654-2|CAA21718.1|  257|Caenorhabditis elegans Hypothetical
           protein Y52B11A.2a protein.
          Length = 257

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 43/121 (35%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
 Frame = +2

Query: 257 EIEALKSIYTE--ELTIDSEITRSYTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPW 430
           EIE+L SI+ +  E T D ++   +        +++ + + LPEDYPSISPP FELS P+
Sbjct: 10  EIESLASIFPDLLEETTDKQLVFKFD-------RDIGMTINLPEDYPSISPPIFELSGPY 62

Query: 431 MDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQTVCKVEKKIEVTEPEVDSLDLT 610
           + R+ K  LH +L+++Y++N+G  VIF W+ ++++ ++ + +     EV EP   + D+ 
Sbjct: 63  LRREQKEVLHNSLNDVYIENIGFPVIFNWISLVQDFIRDLPE-----EVAEPSHVADDVV 117

Query: 611 T 613
           T
Sbjct: 118 T 118



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +3

Query: 630 LKITHGEIIADRKSIFXGHAAEVHSINDVKAVL 728
           + I HGE++ DRKS F  H AEV S  DV  V+
Sbjct: 127 MNIRHGEVLTDRKSAFQAHLAEVRSKEDVDRVM 159


>AL032654-3|CAE54915.1|  101|Caenorhabditis elegans Hypothetical
           protein Y52B11A.2b protein.
          Length = 101

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 37/98 (37%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
 Frame = +2

Query: 257 EIEALKSIYTE--ELTIDSEITRSYTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPW 430
           EIE+L SI+ +  E T D ++   +        +++ + + LPEDYPSISPP FELS P+
Sbjct: 10  EIESLASIFPDLLEETTDKQLVFKFD-------RDIGMTINLPEDYPSISPPIFELSGPY 62

Query: 431 MDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQ 544
           + R+ K  LH +L+++Y++N+G  VIF W+ ++++ ++
Sbjct: 63  LRREQKEVLHNSLNDVYIENIGFPVIFNWISLVQDFIR 100


>U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical
           protein F56D2.2 protein.
          Length = 451

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 374 LPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMI 529
           LP DYPS+S PK EL + WM+++  T+    L  I  +N    V+F   + I
Sbjct: 82  LPNDYPSVSSPKLELESYWMNQEQMTSCETELARICEENQMMEVLFMCYQTI 133


>U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical
           protein F56D2.5 protein.
          Length = 437

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +2

Query: 374 LPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVL 541
           LP DYP++S PK EL + WM+++  T+    L +I  +N    V+F   + I +++
Sbjct: 80  LPNDYPTVSSPKLELESYWMNQEQMTSCETELAKICEENQMMEVLFMCYQTIIDLM 135


>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
 Frame = +2

Query: 260 IEALKSIYTEELTIDSEITR-SYTIRIEE-NKKEVLLYVTLPEDYP------SISPPKFE 415
           I ++ +  T++++  +   R SY I   + N +++  Y+++P DYP       I+ P+  
Sbjct: 510 IASIPTSLTKKISNSAATDRFSYKIEASDGNGRKLTAYISIPADYPRHTALFGIAAPEDS 569

Query: 416 LSAPWMDRQTKTNLHKTLHEIYLDNV 493
            S+  + RQ +  L+   H  Y+D+V
Sbjct: 570 ESSTEVARQIEDRLNTEAH--YVDDV 593


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
 Frame = +2

Query: 257 EIEALKSIYTEELTIDS--EITRSY------TIRIEENKKEVLLYVTLPEDYPSISPPKF 412
           EIEAL SI+ + + ++S  E +R Y      ++  E     VL+ +T+ E YP++SP   
Sbjct: 7   EIEALCSIW-DGVHVESKLEASRRYLKHKIKSLEDESTSASVLIEMTVSEGYPAVSPTVT 65

Query: 413 ELSAPWMDRQTKTNLHKTLHEIYLDNVGETVI 508
             +   +       L + + EI   N  E  I
Sbjct: 66  LSNPRGIGEPEFRELQRQIQEIIEQNSDEMPI 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,846
Number of Sequences: 27780
Number of extensions: 298152
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)