Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M19
         (956 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.079
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -3

Query: 489 PKNPXPPPPXAXFLFTXAXXXPPPPPP 409
           P NP PPPP     F      PPPPPP
Sbjct: 6   PGNPPPPPPPPG--FEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 480 PXPPPPXAXFLFTXAXXXPPPPPP 409
           P PPPP        A   PPPPPP
Sbjct: 762 PPPPPPPGV---AGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 486 KNPXPPPPXAXFLFTXAXXXPPPPPP 409
           K+P PPPP A  + T A    P PPP
Sbjct: 730 KSPPPPPP-AVIVPTPAPAPIPVPPP 754



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 474 PPPPXAXFLFTXAXXXPPPPPP 409
           PPPP    +       PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 480 PXPPPPXAXFLFTXAXXXPPPPP 412
           P PPPP            PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -3

Query: 480 PXPPPPXAXFLFTXAXXXPPPPPPNSXXXPGXXNLPXIP 364
           P P PP A  +       PPPPPP      G    P  P
Sbjct: 748 PIPVPPPAPIM----GGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
 Frame = -3

Query: 579 PPXXXXTXXPPXXEXKXLXHXXXXGGRXXXPKNPXPPPPXAXFLFTXAXXX--PPPPPPN 406
           PP       PP    + +             K P PPP         A     PPPPPP 
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317

Query: 405 SXXXPG 388
           S    G
Sbjct: 318 SRRNRG 323



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
 Frame = -3

Query: 552 PPXXEXKXLXHXXXXGGRXXXPKNPXPPPPXAXF-----LFTXAXXXPPPPPPNSXXXPG 388
           PP    +         G       P PPPP +       L       PPPPPP S    G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 489  PKNPXPPPPXAXFLFTXAXXXPPPPPPNS 403
            P    PPPP A  +       PPPP P S
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 426 PPPPPPNSXXXPGXXNLPXIP 364
           PPPPPP         N+P +P
Sbjct: 356 PPPPPPMPAPIYNVPNVPTVP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,178
Number of Sequences: 5004
Number of extensions: 17841
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)