Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M18
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.043
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   2.7  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   8.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect(2) = 0.043
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 528 PXXPXGGGFFXXXKXXPPPPPXXKKKK 448
           P  P   GF    +  PPPPP   KK+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 25.8 bits (54), Expect(2) = 0.043
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 603 PPPPPPXPG 577
           PPPPPP PG
Sbjct: 9   PPPPPPPPG 17



 Score = 23.0 bits (47), Expect(2) = 9.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 601 PPPPPXPG 578
           PPPPP PG
Sbjct: 24  PPPPPPPG 31



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 481 PPPPPXXKKKK 449
           PPPP   KK+K
Sbjct: 27  PPPPGYVKKRK 37


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 13/46 (28%), Positives = 13/46 (28%)
 Frame = -1

Query: 603  PPPPPPXPGXXXFXXGXGXGXQKKXPXXPXGGGFFXXXKXXPPPPP 466
            PPPPPP P                        G        PPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952



 Score = 21.0 bits (42), Expect(2) = 2.7
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 621 PXXXXKPPPPPPXP 580
           P     P PPPP P
Sbjct: 899 PTIITHPTPPPPPP 912


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect(2) = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 603 PPPPPPXP 580
           PPPPPP P
Sbjct: 240 PPPPPPRP 247



 Score = 20.6 bits (41), Expect(2) = 8.5
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -1

Query: 648 PIFGEXXXPPXXXXKPPPPPP 586
           P F +   P       PPPPP
Sbjct: 224 PEFQQTTSPIFSSSSTPPPPP 244


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 651  PPIFGEXXXPPXXXXKPPPPPP 586
            PP+  +   PP      PPPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP 1711


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 639 GEXXXPPXXXXKPPPPPP 586
           G    PP     PPPPPP
Sbjct: 349 GSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 603 PPPPPPXPG 577
           PPPPPP PG
Sbjct: 761 PPPPPPPPG 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,001
Number of Sequences: 5004
Number of extensions: 24716
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)