Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_M17
(924 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.099
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 30 0.53
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.70
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.70
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.099
Identities = 26/103 (25%), Positives = 29/103 (28%)
Frame = +3
Query: 474 PXXPXPPXXGGGXXXSPPPRGXXXXPPXXGXXPXKXFXPKXPQRXXTPKRXPXGVFXQXP 653
P P PP PP+G PP P P R P V
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP-----PPPRSAPSTG-RQPPPLSSSRAVSNPPA 390
Query: 654 PPPEXXSKNXPPXLXGXNPPXNFKNPRXXPPXNPPXXPXXSXP 782
PPP ++ P N P PP PP P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Score = 25.8 bits (54), Expect = 8.6
Identities = 26/106 (24%), Positives = 29/106 (27%)
Frame = +3
Query: 471 PPXXPXPPXXGGGXXXSPPPRGXXXXPPXXGXXPXKXFXPKXPQRXXTPKRXPXGVFXQX 650
PP P PP PPP P P P R P P G +
Sbjct: 361 PP--PPPPRSAPSTGRQPPPLSSSRAVSNPPAPP-----PAIPGRS-APALPPLGNASRT 412
Query: 651 PPPPEXXSKNXPPXLXGXNPPXNFKNPRXXPPXNPPXXPXXSXPXP 788
PP + PP PP + P PP P P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 654 PPPEXXSKNXPPXLXGXNPPXNFKNPRXXPPXNPPXXPXXSXP 782
PPP +N PP PP ++ PP P P + P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQ-TAYPPQQAPYPPVQAYP 247
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.70
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +2
Query: 425 PPGXXXXXFGXPXXXPPXXPXAPGLXGGXXXFPPPKGGXXVXPKXGGXPXKXLLXKGPPK 604
PP P P P P P P G PK P + PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK----PAAGVPPVPPPS 1195
Query: 605 XXNP*KXPFXGFXPXPPP 658
P P G P PPP
Sbjct: 1196 EAPPVPKPSVGVPPVPPP 1213
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 837 AHXXPXGKKGGXXFR*XGRGGXRXGXXGGXQGXXPGDF*NSXGG 706
A P G+ G FR GRGG R G G +G G GG
Sbjct: 130 ARNGPAGRGGRGGFR-GGRGGSRGGFGGNSRGGFGGGSRGGFGG 172
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 456 PXXXXPPXXPXPPXXGGGXXXSPPPRGXXXXPPXXGXXPXKXFXPKXPQRXXTPK 620
P PP P PP G PPP PP + + P PQ PK
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP-----PPPAVSAGGSRYYAP-APQAEPEPK 804
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 519 SPPPRGXXXXPPXXGXXPXKXFXPKXPQRXXTPKRXPXGVFXQXPPPP 662
SPPP P P P P P GV PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +2
Query: 422 PPPGXXXXXFGXPXXXP-PXXPXAPGLXGGXXXFPPPKGGXXVXP 553
PPP P P P P AP + GG PPP G P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGP 775
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +2
Query: 743 PXKPPXXPXLFPPLPXYRXXXPPFFPXGXXWAXSLTPPRXXFSRXGXXPP-PPK 901
P PP P PP+P P P A + P S PP PPK
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -1
Query: 858 RGGVREXAHXXPXGKKGGXXFR*XGRGGXRXGXXGGXQGXXPG 730
RGG R + G GG GRGG R G GG +G G
Sbjct: 8 RGG-RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 858 RGGVREXAHXXPXGKKGGXXFR*XGRGGXRXGXXGGXQG 742
RGG R G +GG GRGG G G G
Sbjct: 32 RGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,302
Number of Sequences: 5004
Number of extensions: 24038
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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