Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M16
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    92   1e-19
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    30   0.38 
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    29   1.2  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    28   1.5  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    28   2.0  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    27   2.7  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   3.6  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   3.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   4.7  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.2  

>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
 Frame = +3

Query: 501 RGLIWKKGYDKGDIKGHVYDDVLPALEQWRSVE-GQKIYIYSSGSVQAQKLLFGQSSAGD 677
           +G IWKKGY+  ++  H++ DV+PA++  RS++ G ++YIYSSGSV AQKL F  S AG+
Sbjct: 76  QGRIWKKGYESNELTSHLFPDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGN 133

Query: 678 XLPLIDGHFDTAVGAKQEATSYTAIVEKIGCKPEEILF 791
            L    G++DT +G K E  SY  IV      P E LF
Sbjct: 134 LLKYFSGYYDTTIGLKTECGSYVKIVG--NSNPREWLF 169



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = +1

Query: 196 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-EEDVKEAVNALRKLAIEDQEK 372
           K LLLDIEGT  SISFVKDKLFPYA    + +++  ++ +E+++E      +  I  ++ 
Sbjct: 3   KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL 62

Query: 373 SVEG 384
             EG
Sbjct: 63  HAEG 66


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 262 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 378
           PY+ E VK+ L  +  EEDV    +AL  L+   QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 755 DNGS-VTGSFLFSTYSSVEMAIDERKXVPSR*LAKKKFLGLDG 630
           D+GS +  +FL   Y + E    +    P   L  K+FLGLDG
Sbjct: 7   DSGSDLVDAFLSDAYLNTEELRKDGPFSPDEFLVSKRFLGLDG 49


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 190 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 369
           + ++  L +E T TSI  +   +FPY    +  F    W  +D    +  L  L +  ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241

Query: 370 KSV 378
             +
Sbjct: 242 DEI 244


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 274 ENVKDFLDAQWDE-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 423
           EN    L  Q+D+ E +   V+   K A+ D  + V   + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 537 DIKGHVYDDVLPALEQWRSVEGQKIYI 617
           D  G+VY+D +  L++   + G KIYI
Sbjct: 118 DEDGYVYEDTMKHLDKITEITGAKIYI 144


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 409 HPLQEW*PVLQHSSPD 362
           HP +EW   LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 251 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 96
           ++  +I +  P +  SK  +F+    ITVF    S DP+ +  N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/79 (22%), Positives = 38/79 (48%)
 Frame = +3

Query: 516 KKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDXLPLID 695
           ++ YD   +  + YD ++   EQ+ +  GQ+ ++ S G  Q Q++   ++   D   L+ 
Sbjct: 535 RRVYDAAKL-ANAYDFIMTLPEQFSTNVGQRGFLMSGG--QKQRIAIARAVISDPKILLL 591

Query: 696 GHFDTAVGAKQEATSYTAI 752
               +A+ +K E     A+
Sbjct: 592 DEATSALDSKSEVLVQKAL 610


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 271  EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 375
            EEN +  L A  DEEDV+ A  A ++ A+E  E S
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFS 1214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,038
Number of Sequences: 5004
Number of extensions: 74609
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)