Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M14
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201...    35   0.097
02_04_0588 + 24115314-24115570,24116722-24116971                       29   6.4  
06_01_0235 + 1789037-1790077                                           28   8.5  
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093...    28   8.5  

>05_03_0603 -
           16117695-16118396,16118679-16118939,16120100-16120144,
           16120362-16120453,16120568-16120706,16121027-16121063,
           16121147-16121434,16122000-16122074,16122505-16122581,
           16123092-16123256,16123387-16123543,16124558-16124733,
           16124828-16124940,16125398-16125428,16126487-16126605,
           16126696-16126789,16127384-16127458,16127548-16127666,
           16127751-16127907,16129252-16129398
          Length = 1022

 Score = 34.7 bits (76), Expect = 0.097
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 152 GGVVERRLRPVYDWLDNGYNKKALQEAEKVLKKSPS 259
           GG+ ERR+RP++D +D+   K AL+    +L K P+
Sbjct: 9   GGIPERRVRPIWDAVDSRQYKAALKLCTALLAKHPT 44


>02_04_0588 + 24115314-24115570,24116722-24116971
          Length = 168

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 422 VTHIAETLEMTLSSPVMSCHR*ASPRPMHLAQLLPLGLYLTYKVLEL 282
           V+H+ + L++   + V S    + P P++   LL +G YL +KV +L
Sbjct: 47  VSHVLKALQLLALASVASF---SWPPPLYSVALLAVGQYLNFKVYQL 90


>06_01_0235 + 1789037-1790077
          Length = 346

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 234 SASCKAFLLYPLSSQSYTGRNRRSTTPPS 148
           +A C     YP +  SY G  RR+  PP+
Sbjct: 217 AARCPEVCAYPFAIPSYVGGGRRAEAPPN 245


>05_07_0329 -
           29308867-29308932,29309040-29309159,29309245-29309364,
           29309566-29310123,29310199-29310258,29310839-29310904,
           29310993-29311103,29311167-29311257,29311349-29311449,
           29311534-29311641,29311737-29314205
          Length = 1289

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 VHDGGVVERRLRPVYDWLDNGYNKKALQEAEKVLKKSP 256
           V DG V E + RP+YD       +K L+ A KV+++ P
Sbjct: 518 VADGAVPETKKRPIYDSKKKKGQQKTLETA-KVVEEQP 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,824
Number of Sequences: 37544
Number of extensions: 295826
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)