Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_M13
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 102 6e-23
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 5e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.84
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.6
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 2.6
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 4.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 4.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.9
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 5.9
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 5.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 5.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 7.8
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 7.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 7.8
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 102 bits (245), Expect = 6e-23
Identities = 71/185 (38%), Positives = 99/185 (53%)
Frame = +3
Query: 219 EDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGW 398
E KE T E +E++ K + S DE E +++QVE+YF D NL DKFL + +DGW
Sbjct: 43 EKKEETTEK--KEDDGKKDLSFDEAE----VLKQVEFYFSDTNLPHDKFLWTTSQKNDGW 96
Query: 399 VPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRK 578
VP++ + F R+ + + + I NAL KS LLEV E +KVRR PL ++ K
Sbjct: 97 VPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEAGEKVRR--MIPLVRVD---NK 149
Query: 579 EICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTR 758
+ RS+Y KGF D D + K F+E I + + K+ FKGSVF FK
Sbjct: 150 SVMERSVYCKGFG-DEKDDTQIALEKFFEENAGPISAVRMRRDDDKK-FKGSVFVEFKEP 207
Query: 759 EQAEK 773
+ A K
Sbjct: 208 DVANK 212
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 318 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 497
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 498 LEVSED 515
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 31.1 bits (67), Expect = 0.21
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 246 NGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 392
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.84
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +3
Query: 333 FGDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSG 494
+ +N + KFL + K + L E+ TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 495 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 668
LL S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.6
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +3
Query: 273 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTED 452
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 453 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 626
+ V + T LL+++ D+ R + +NE E+ K+ N S+ K
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139
Query: 627 SLD 635
LD
Sbjct: 140 KLD 142
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 27.5 bits (58), Expect = 2.6
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Frame = +3
Query: 165 LVFLKSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDV 344
LV+ + + H ED V EE+ E E E + I R+V D
Sbjct: 540 LVYFRKSRLDHILSPVTAEDVPFHVRNTLDEEHRVVERKLLERE-EQQIYRRVRVLTTDG 598
Query: 345 NLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL---LEVSED 515
F D P+ I TK R A + + +A LN+ TSG+ L +
Sbjct: 599 FKKYHGFDMTDFSASDD-DPVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQ 657
Query: 516 NKKVR 530
N+ VR
Sbjct: 658 NRTVR 662
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.5
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Frame = +3
Query: 456 DVIANALNKSTSGLLEVSEDNKKVRRNPEQPL------PEMNEELRKEIC--NRS---IY 602
D+ AL+ +T E E++K N Q E NE+ +E NR ++
Sbjct: 107 DIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMF 166
Query: 603 AKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFK 752
G + + D L +YF+QF EV + + R ST R +G F TFK
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMR---DSTTGR-SRGFGFLTFK 212
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 639 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFKTREQAE 770
LLN+FK+++ VE + + R + + K F VF TF+++ + E
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQFKKE 203
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +3
Query: 588 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQA 767
N +++ + A DDL N+F +++ ++ E +G F TF E A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGEN----RGYGFVTFSMLEDA 59
Query: 768 EK 773
++
Sbjct: 60 QR 61
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 516 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 632
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 201 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ- 377
R + +K ++ E ++++AK E+ + + E+ ++ ++ +F +L + Q+
Sbjct: 879 RNSEAENEKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTV 935
Query: 378 IKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 485
I + P +TKFN+ K+ T + A +S
Sbjct: 936 INAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARES 971
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 5.9
Identities = 27/117 (23%), Positives = 47/117 (40%)
Frame = +3
Query: 225 KEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVP 404
K + +N + K+E ++ E L ++ E V+L + Q KLD +
Sbjct: 607 KNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDEESKAVSQRKLD---LE 663
Query: 405 LEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELR 575
+I +LA TE+ + L L ++ + K V E P PE++ R
Sbjct: 664 YKINNSKTQLATATEEYHEHSKQLEAEKQELSKLEDGLKSVNLTEEAPKPEVDSTPR 720
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 600 YAKGFAKDASLD-DLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTRE 761
Y K K+ + D + L+YF++F + V +R Y ++ K F+ ++F + E
Sbjct: 983 YTKKNPKEPTADVNSLSYFEKFFVLFVVNLRHYFQERMKALKFRSTLFGDLEILE 1037
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 213 MTEDKEVTVETNGQEENAKTENSEDE 290
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 391 SSNFICSCRNLSRC 350
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 7.8
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Frame = +3
Query: 150 RSLNKLVFLKSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEY 329
RS+ + + K + I + K+ ++ + E + + N + ++ + V+Y
Sbjct: 68 RSVTRDDYEKGKTIVSSLALSSISGKDGSISSQNAEGLSSSSNRPLDVNDALSYLELVKY 127
Query: 330 YFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNK-STSGL-LE 503
YF + ++FL +I D L+ L NR+++L + N SG +E
Sbjct: 128 YFSERREIYNRFL--EIMRDFKSQALDTLGVINRVSELFNGYPQLIEGFNTFLPSGYKIE 185
Query: 504 VSED--NKKVRR--NPEQPLPE 557
V D N V R P PLP+
Sbjct: 186 VQLDSSNTSVVRVGTPMHPLPQ 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,879
Number of Sequences: 5004
Number of extensions: 66277
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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