Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_M12
(966 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.060
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.24
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.74
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.74
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.060
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 563 GGGXXXFGGGXGXXPPPPXXXXGGGG 486
GGG FGGG G PP P G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGG 212
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 563 GGGXXXFGGGXGXXPPPPXXXXGGGG 486
GGG FGGG G P GG G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPG 266
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 487 PPPPXKXXGGGGXXPXPPPKXXXPPPGGGGR 579
PPPP G G P PPP GG R
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 30.3 bits (65), Expect = 0.42
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 486 PPPPXXGGXGGGXAPXPPP 542
PPPP G G G P PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.56
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -2
Query: 593 GXXXPLPPPPGGGXXXFGGGXGXXPPPPXXXXGGG 489
G P PPPPG G G PPPP GG
Sbjct: 759 GGPPPPPPPPGVA----GAGPPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 486 PPPPXXGGXGGGXAPXPPPKXXXPPP 563
PPPP G G P PPP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP----PPP 783
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 487 PPPPXKXXGGGGXXPXPPPKXXXPPPGGGGRGXXXP 594
PPPP G G P PPP P GG P
Sbjct: 763 PPPPPPGVAGAGPPPPPPP---PPAVSAGGSRYYAP 795
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 841 VXDPPPXKKXPXPPXPPXXXXXCLXXPPPP 930
V P P P PP PP PPPP
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +1
Query: 853 PPXKKXPXPPXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
P P P PP PPPP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.74
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 850 PPPXKKXPXPPXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P PP P PPPP + P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +1
Query: 853 PPXKKXPXPPXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PP P PP PP PP P + P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.74
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 487 PPPPXKXXGGGGXXPXPPPKXXXPPP 564
PPPP G P PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 486 PPPPXXGGXGGGXAPXPPPKXXXPPP 563
PPPP G P PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/78 (20%), Positives = 21/78 (26%)
Frame = +3
Query: 657 PPXRGRXKXXXPVGGXXXXPPPPXXXXXPXXXXXGGXXXXKKKKIXPPPXXPKKTPPXXX 836
PP R + P+G P P G + + PPP P+ P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 837 XXXXXXXXXXXXXPPXXP 890
PP P
Sbjct: 375 QPPPLSSSRAVSNPPAPP 392
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 850 PPPXKKXPXP--PXPPXXXXXCLXXPPPPXXXXNXXXXPPP 966
PPP P P PP PPPP PPP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 856 PXKKXPXPPXPPXXXXXCLXXPPPP 930
P P PP PP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,435
Number of Sequences: 5004
Number of extensions: 29289
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -