Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M11
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   170   3e-43
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   170   3e-43
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   170   3e-43
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   126   3e-30
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   4.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   6.0  
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    26   6.0  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   8.0  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  170 bits (413), Expect = 3e-43
 Identities = 83/91 (91%), Positives = 87/91 (95%)
 Frame = +3

Query: 306 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 485
           TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LF
Sbjct: 46  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105

Query: 486 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 578
           EDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136



 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = +2

Query: 170 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 304
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  170 bits (413), Expect = 3e-43
 Identities = 83/91 (91%), Positives = 87/91 (95%)
 Frame = +3

Query: 306 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 485
           TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LF
Sbjct: 46  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105

Query: 486 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 578
           EDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136



 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = +2

Query: 170 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 304
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  170 bits (413), Expect = 3e-43
 Identities = 83/91 (91%), Positives = 87/91 (95%)
 Frame = +3

Query: 306 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 485
           TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LF
Sbjct: 46  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105

Query: 486 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 578
           EDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136



 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = +2

Query: 170 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 304
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  126 bits (305), Expect = 3e-30
 Identities = 65/94 (69%), Positives = 79/94 (84%), Gaps = 6/94 (6%)
 Frame = +3

Query: 306 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEA 467
           T ALREIR+YQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS A+  LQEA+EA
Sbjct: 26  TTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEA 85

Query: 468 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 569
           +LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 86  FLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 HIVIALXTVALREIRRYQKSTELLIRKLPFQR 380
           H+   L   A RE+++ ++  EL++  LPFQR
Sbjct: 331 HVWEKLEEEAPREVKQIEQPKELVLNLLPFQR 362


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 539 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 363
           LR+   T  +    + +  QA        LE S     + Q+ SFEIL     +TLE   
Sbjct: 73  LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132

Query: 362 TDKQLSR 342
           ++  +SR
Sbjct: 133 SNPNISR 139


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 500 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 324
           Q+G F +AN I  A  + +      E +   EIL        ER L+ K+ +R   T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 165 KQWLVLNKQPVNLLEVKLRVNNLLQ 239
           K++L L K PV L++ K    N+L+
Sbjct: 12  KEYLALQKNPVELVDAKPATENILE 36


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 324 IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 488
           + +++ S  LLI   P Q  +RE+A   DF    +F   +   + A  E  EAY+  L E
Sbjct: 524 LSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,754
Number of Sequences: 5004
Number of extensions: 59454
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)