Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M10
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    44   4e-05
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   7.0  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +3

Query: 261 RFEKIGXKXVGLKXVWPSXELXQQXXSDXASRPXFPXLXXXMSSXPVVPMVWEGR 425
           +FE  G K   LK + PS +L ++  ++   +P +  L   M+S PV  M+WEG+
Sbjct: 26  KFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGK 80



 Score = 36.3 bits (80), Expect = 0.007
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 464 TNPTXSXXGTIRXXLXIQVGRNIIHXSDXXESXTKK 571
           +NP  S  GTIR    I +GRN+ H SD  ES  ++
Sbjct: 93  SNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANRE 128


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 400 WSLWYGRAVMYVKTGR 447
           ++ WYG  ++Y+KTGR
Sbjct: 499 YNAWYGLGMVYLKTGR 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,969
Number of Sequences: 5004
Number of extensions: 10967
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)