Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M10
         (979 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416...    55   1e-07
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835...    49   5e-06
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215...    47   2e-05
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406...    43   4e-04

>05_07_0347 -
           29440541-29440664,29440908-29441020,29441522-29441689,
           29442341-29442391,29442518-29442555,29442885-29442978
          Length = 195

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 27/57 (47%), Positives = 32/57 (56%)
 Frame = +3

Query: 261 RFEKIGXKXVGLKXVWPSXELXQQXXSDXASRPXFPXLXXXMSSXPVVPMVWEGRNV 431
           RFE+ G K V +K V PS E  Q+   D   RP F  L   +SS PV+ MVWEG  V
Sbjct: 68  RFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNGLCDFLSSGPVLAMVWEGEGV 124



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = +2

Query: 464 TNPTXSXXGTIRXXLXIQVGRNIIHXSDXXESXTKKXDSGL 586
           T+P  S  GTIR  L + VGRNIIH SD  E  T K + GL
Sbjct: 135 TDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE--TAKAEIGL 173


>07_03_0445 -
           18281715-18281832,18282274-18282505,18283486-18283534,
           18283733-18283783
          Length = 149

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 24/57 (42%), Positives = 32/57 (56%)
 Frame = +3

Query: 261 RFEKIGXKXVGLKXVWPSXELXQQXXSDXASRPXFPXLXXXMSSXPVVPMVWEGRNV 431
           RFEK G    G+K +       QQ  +D + +P FP L   + S PVV MVWEG++V
Sbjct: 24  RFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 80



 Score = 35.9 bits (79), Expect = 0.049
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 464 TNPTXSXXGTIRXXLXIQVGRNIIHXSDXXESXTKK 571
           T P  +  GTIR    ++VGRN+IH SD  ++  K+
Sbjct: 91  TRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKE 126


>12_02_0695 +
           22220054-22220056,22221226-22221276,22221415-22221501,
           22222064-22222144,22222241-22222353,22222482-22222531,
           22222790-22222857
          Length = 150

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = +3

Query: 261 RFEKIGXKXVGLKXVWPSXELXQQXXSDXASRPXFPXLXXXMSSXPVVPMVWEGRNV 431
           RFEK G    GLK      +L Q+   D   +P FP L   ++S PVV M WEG  V
Sbjct: 25  RFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLIEYITSGPVVCMAWEGNGV 81



 Score = 38.7 bits (86), Expect = 0.007
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 464 TNPTXSXXGTIRXXLXIQVGRNIIHXSDXXESXTKK 571
           TNP  +  GTIR  L +Q GRN++H SD  ++  ++
Sbjct: 92  TNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKRE 127


>10_08_0945 -
           21738643-21738760,21740056-21740287,21740582-21740630,
           21740720-21740776
          Length = 151

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +3

Query: 261 RFEKIGXKXVGLKXVWPSXELXQQXXSDXASRPXFPXLXXXMSSXPVVPMVWEGRNV 431
           RFEK G     +K +       ++  +D +S+P F  L   + S PVV MVWEG+ V
Sbjct: 26  RFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGLVEYIVSGPVVAMVWEGKQV 82



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 464 TNPTXSXXGTIRXXLXIQVGRNIIHXSDXXESXTKK 571
           TNP  +  GTIR    + +GRN+IH SD  E+  K+
Sbjct: 93  TNPLAAEPGTIRGDFAVDIGRNVIHGSDSVENARKE 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,080,037
Number of Sequences: 37544
Number of extensions: 72049
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)