Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M10
         (979 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    49   4e-06
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    35   0.077

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 26/64 (40%), Positives = 34/64 (53%)
 Frame = +3

Query: 261 RFEKIGXKXVGLKXVWPSXELXQQXXSDXASRPXFPXLXXXMSSXPVVPMVWEGRNVCED 440
           RFE+ G K V LK +  S    +    D   +P FP L   MSS PVV MVW+G +V + 
Sbjct: 27  RFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSLIEYMSSGPVVAMVWQGLDVVKQ 86

Query: 441 WPSI 452
             S+
Sbjct: 87  GRSM 90



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +2

Query: 464 TNPTXSXXGTIRXXLXIQVGRNIIHXSDXXESXTKK 571
           TNP  S  GTIR    IQ GRNI H SD  +S  ++
Sbjct: 94  TNPLASAPGTIRGDFCIQTGRNICHGSDAVDSANRE 129


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 35.1 bits (77), Expect = 0.077
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 354 RPXFPXLXXXMSSXPVVPMVWEGRNV 431
           +P FP L   MSS PVV M+WEG +V
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDV 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,858,887
Number of Sequences: 27780
Number of extensions: 61225
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)