Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M09
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    95   1e-20
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    36   0.010
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   1.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.3  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   8.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.4  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
 Frame = +2

Query: 281 TEVVD-IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMK 457
           TE V+ +V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K
Sbjct: 62  TETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVK 119

Query: 458 DILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEXEKF 610
            IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 120 KILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +2

Query: 218 PVVVQIKELLLSGCCLYF*ACTEVVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKL 397
           P +  +KE L  G CL      + +D V  ++L+E   F ++K  T+YLK   + L  K 
Sbjct: 68  PTMRNLKEKLAGGLCL---EDIQNIDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKF 122

Query: 398 EEKAPDQVEVFKT 436
           +   PD VE   T
Sbjct: 123 QGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 651 ASLELLSYFLSNI*NFSXSRPCLKNIMIGICVPSKSLY 538
           AS ELL+       NFS  R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 566 VFAYHQSLYIPSWQPC-HHN 510
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -2

Query: 310 VVQDYVNHFRTGLEVK-ATSTEEQFFDLHHHRIR---DLK*KTKR 188
           +VQDY+N +++ L  + A+  EE+   L H R R   DL+ + KR
Sbjct: 119 IVQDYLNDWQSDLSSQFASLEEERAVQLKHDRERAEVDLQLRLKR 163


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/17 (52%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +3

Query: 633 SIIPNWRLGYFXF-FYL 680
           +++PNW++GY  F FYL
Sbjct: 200 NLLPNWKIGYGRFSFYL 216


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +3

Query: 771 PXNXFPSLPXLTAXXPPXXGPXXXXPPVLPXXXP 872
           P    P +P L    PP   P    PP +P   P
Sbjct: 507 PIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFP 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,974
Number of Sequences: 5004
Number of extensions: 61765
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)